Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00554 and MPMX19_00555 are separated by 161 nucleotides MPMX19_00555 and MPMX19_00556 overlap by 4 nucleotides MPMX19_00556 and MPMX19_00557 are separated by 94 nucleotides MPMX19_00557 and MPMX19_00558 are separated by 78 nucleotides
MPMX19_00554: MPMX19_00554 - 4,5-DOPA dioxygenase extradiol, at 569,656 to 570,459
_00554
MPMX19_00555: MPMX19_00555 - ATP synthase subunit b, at 570,621 to 571,100
_00555
MPMX19_00556: MPMX19_00556 - ATP synthase subunit b, at 571,097 to 571,747
_00556
MPMX19_00557: MPMX19_00557 - ATP synthase subunit c, at 571,842 to 572,066
_00557
MPMX19_00558: MPMX19_00558 - ATP synthase subunit a, at 572,145 to 572,888
_00558
Position (kb) 571
572 Strain fitness (log2 ratio) -2
-1
0
1 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.218 kb on + strand, within MPMX19_00554 at 570.218 kb on + strand, within MPMX19_00554 at 570.219 kb on - strand, within MPMX19_00554 at 570.251 kb on + strand, within MPMX19_00554 at 570.252 kb on - strand, within MPMX19_00554 at 570.252 kb on - strand, within MPMX19_00554 at 570.252 kb on - strand, within MPMX19_00554 at 572.120 kb on - strand at 572.120 kb on - strand at 572.120 kb on - strand at 572.147 kb on - strand at 572.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 570,104 + MPMX19_00554 0.56 +1.1 570,104 + MPMX19_00554 0.56 -1.0 570,104 + MPMX19_00554 0.56 -1.8 570,104 + MPMX19_00554 0.56 -1.1 570,104 + MPMX19_00554 0.56 -2.7 570,104 + MPMX19_00554 0.56 -0.6 570,104 + MPMX19_00554 0.56 -0.5 570,105 - MPMX19_00554 0.56 -1.0 570,105 - MPMX19_00554 0.56 +0.6 570,105 - MPMX19_00554 0.56 -2.1 570,105 - MPMX19_00554 0.56 -0.8 570,105 - MPMX19_00554 0.56 -0.4 570,105 - MPMX19_00554 0.56 +0.2 570,105 - MPMX19_00554 0.56 +0.5 570,105 - MPMX19_00554 0.56 -1.6 570,105 - MPMX19_00554 0.56 -0.3 570,218 + MPMX19_00554 0.70 -0.5 570,218 + MPMX19_00554 0.70 -0.0 570,219 - MPMX19_00554 0.70 -0.2 570,251 + MPMX19_00554 0.74 -0.7 570,252 - MPMX19_00554 0.74 -0.1 570,252 - MPMX19_00554 0.74 -1.4 570,252 - MPMX19_00554 0.74 -0.4 572,120 - +0.0 572,120 - -1.0 572,120 - -0.8 572,147 - +0.8 572,147 - -1.8
Or see this region's nucleotide sequence