Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00544

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00542 and MPMX19_00543 overlap by 11 nucleotidesMPMX19_00543 and MPMX19_00544 overlap by 4 nucleotidesMPMX19_00544 and MPMX19_00545 overlap by 4 nucleotidesMPMX19_00545 and MPMX19_00546 are separated by 452 nucleotides MPMX19_00542: MPMX19_00542 - Sulfur carrier protein FdhD, at 557,888 to 558,769 _00542 MPMX19_00543: MPMX19_00543 - Molybdenum cofactor guanylyltransferase, at 558,759 to 559,397 _00543 MPMX19_00544: MPMX19_00544 - hypothetical protein, at 559,394 to 559,903 _00544 MPMX19_00545: MPMX19_00545 - hypothetical protein, at 559,900 to 560,430 _00545 MPMX19_00546: MPMX19_00546 - Chaperone protein TorD, at 560,883 to 561,509 _00546 Position (kb) 559 560Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.509 kb on + strand, within MPMX19_00542at 558.509 kb on + strand, within MPMX19_00542at 558.510 kb on - strand, within MPMX19_00542at 558.510 kb on - strand, within MPMX19_00542at 558.510 kb on - strand, within MPMX19_00542at 558.626 kb on - strand, within MPMX19_00542at 558.626 kb on - strand, within MPMX19_00542at 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 559.205 kb on + strand, within MPMX19_00543at 559.635 kb on - strand, within MPMX19_00544at 559.635 kb on - strand, within MPMX19_00544at 559.751 kb on + strand, within MPMX19_00544at 559.752 kb on - strand, within MPMX19_00544at 559.752 kb on - strand, within MPMX19_00544at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.296 kb on + strand, within MPMX19_00545at 560.297 kb on - strand, within MPMX19_00545at 560.297 kb on - strand, within MPMX19_00545at 560.428 kb on + strandat 560.429 kb on - strandat 560.429 kb on - strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.653 kb on + strandat 560.653 kb on + strandat 560.653 kb on + strandat 560.653 kb on + strandat 560.654 kb on - strandat 560.654 kb on - strandat 560.716 kb on - strandat 560.716 kb on - strandat 560.716 kb on - strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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558,419 + MPMX19_00542 0.60 -0.8
558,419 + MPMX19_00542 0.60 -0.2
558,419 + MPMX19_00542 0.60 -0.1
558,419 + MPMX19_00542 0.60 +0.3
558,419 + MPMX19_00542 0.60 +0.2
558,419 + MPMX19_00542 0.60 -1.8
558,419 + MPMX19_00542 0.60 -0.5
558,419 + MPMX19_00542 0.60 -0.0
558,419 + MPMX19_00542 0.60 -0.2
558,419 + MPMX19_00542 0.60 +0.2
558,419 + MPMX19_00542 0.60 -1.2
558,419 + MPMX19_00542 0.60 -0.3
558,419 + MPMX19_00542 0.60 -0.8
558,419 + MPMX19_00542 0.60 +0.6
558,419 + MPMX19_00542 0.60 -1.1
558,419 + MPMX19_00542 0.60 -0.9
558,419 + MPMX19_00542 0.60 -0.1
558,419 + MPMX19_00542 0.60 -0.4
558,419 + MPMX19_00542 0.60 -1.2
558,419 + MPMX19_00542 0.60 -1.4
558,419 + MPMX19_00542 0.60 -0.8
558,420 - MPMX19_00542 0.60 -1.4
558,420 - MPMX19_00542 0.60 -3.3
558,420 - MPMX19_00542 0.60 -2.4
558,420 - MPMX19_00542 0.60 +0.8
558,420 - MPMX19_00542 0.60 +0.3
558,420 - MPMX19_00542 0.60 +2.4
558,420 - MPMX19_00542 0.60 -0.2
558,420 - MPMX19_00542 0.60 -1.4
558,420 - MPMX19_00542 0.60 +0.3
558,420 - MPMX19_00542 0.60 -1.7
558,420 - MPMX19_00542 0.60 -1.0
558,420 - MPMX19_00542 0.60 +0.2
558,420 - MPMX19_00542 0.60 +0.5
558,420 - MPMX19_00542 0.60 +0.9
558,420 - MPMX19_00542 0.60 +0.0
558,420 - MPMX19_00542 0.60 -0.8
558,420 - MPMX19_00542 0.60 -0.3
558,467 + MPMX19_00542 0.66 -1.5
558,467 + MPMX19_00542 0.66 -1.0
558,467 + MPMX19_00542 0.66 +0.6
558,467 + MPMX19_00542 0.66 -1.6
558,467 + MPMX19_00542 0.66 +0.8
558,468 - MPMX19_00542 0.66 -2.4
558,468 - MPMX19_00542 0.66 +0.1
558,468 - MPMX19_00542 0.66 -0.4
558,468 - MPMX19_00542 0.66 -0.0
558,468 - MPMX19_00542 0.66 -0.4
558,468 - MPMX19_00542 0.66 -0.6
558,468 - MPMX19_00542 0.66 +1.0
558,468 - MPMX19_00542 0.66 -0.9
558,468 - MPMX19_00542 0.66 -1.3
558,468 - MPMX19_00542 0.66 -0.1
558,468 - MPMX19_00542 0.66 -0.9
558,509 + MPMX19_00542 0.70 +0.1
558,509 + MPMX19_00542 0.70 -0.4
558,510 - MPMX19_00542 0.71 +0.7
558,510 - MPMX19_00542 0.71 -1.4
558,510 - MPMX19_00542 0.71 -1.8
558,626 - MPMX19_00542 0.84 -0.6
558,626 - MPMX19_00542 0.84 -0.0
558,767 + -1.7
558,767 + -0.2
558,767 + -0.7
558,767 + +0.4
558,767 + -0.7
558,767 + -0.0
558,767 + +0.9
558,767 + +0.2
558,767 + +1.2
558,768 - -1.7
558,768 - +0.0
558,768 - -0.3
558,768 - +0.1
558,768 - -0.9
558,768 - +0.4
558,768 - +0.2
558,993 + MPMX19_00543 0.37 +1.4
558,993 + MPMX19_00543 0.37 -1.3
558,993 + MPMX19_00543 0.37 +1.2
558,993 + MPMX19_00543 0.37 -0.6
558,994 - MPMX19_00543 0.37 +0.6
558,994 - MPMX19_00543 0.37 -2.8
558,994 - MPMX19_00543 0.37 -1.0
559,205 + MPMX19_00543 0.70 +1.0
559,635 - MPMX19_00544 0.47 +1.2
559,635 - MPMX19_00544 0.47 -0.0
559,751 + MPMX19_00544 0.70 -0.9
559,752 - MPMX19_00544 0.70 +1.9
559,752 - MPMX19_00544 0.70 -0.7
560,215 + MPMX19_00545 0.59 -1.9
560,215 + MPMX19_00545 0.59 -0.5
560,215 + MPMX19_00545 0.59 -0.1
560,215 + MPMX19_00545 0.59 -1.4
560,215 + MPMX19_00545 0.59 -0.9
560,215 + MPMX19_00545 0.59 +0.3
560,216 - MPMX19_00545 0.60 -1.0
560,216 - MPMX19_00545 0.60 +0.5
560,216 - MPMX19_00545 0.60 -1.0
560,242 + MPMX19_00545 0.64 -0.3
560,242 + MPMX19_00545 0.64 -0.3
560,242 + MPMX19_00545 0.64 -0.2
560,242 + MPMX19_00545 0.64 -0.2
560,242 + MPMX19_00545 0.64 -0.2
560,242 + MPMX19_00545 0.64 +0.5
560,242 + MPMX19_00545 0.64 +0.4
560,243 - MPMX19_00545 0.65 -0.1
560,243 - MPMX19_00545 0.65 -0.5
560,243 - MPMX19_00545 0.65 +1.6
560,243 - MPMX19_00545 0.65 +1.0
560,243 - MPMX19_00545 0.65 -1.3
560,254 + MPMX19_00545 0.67 -1.0
560,254 + MPMX19_00545 0.67 -1.1
560,254 + MPMX19_00545 0.67 +2.8
560,254 + MPMX19_00545 0.67 +0.5
560,254 + MPMX19_00545 0.67 -1.9
560,255 - MPMX19_00545 0.67 -1.2
560,255 - MPMX19_00545 0.67 -0.7
560,255 - MPMX19_00545 0.67 -0.6
560,296 + MPMX19_00545 0.75 -0.6
560,297 - MPMX19_00545 0.75 +0.6
560,297 - MPMX19_00545 0.75 +0.8
560,428 + -1.4
560,429 - -2.4
560,429 - -1.0
560,455 + +0.9
560,455 + -1.9
560,455 + +0.3
560,455 + +0.5
560,455 + -0.2
560,455 + +0.1
560,455 + +0.1
560,455 + -0.6
560,455 + +0.4
560,455 + -1.5
560,455 + +0.9
560,455 + -1.7
560,455 + +0.8
560,455 + -0.9
560,455 + +0.2
560,455 + -1.5
560,456 - -1.0
560,456 - +0.6
560,456 - -1.7
560,456 - -0.5
560,456 - +0.8
560,456 - -1.0
560,456 - -2.1
560,456 - -0.9
560,456 - -1.2
560,456 - -0.6
560,456 - -0.7
560,456 - +0.2
560,653 + +0.3
560,653 + -0.5
560,653 + -0.8
560,653 + -0.5
560,654 - -2.1
560,654 - -0.9
560,716 - -1.2
560,716 - +0.3
560,716 - -0.3
560,730 + -3.0
560,730 + +0.1
560,730 + -0.9
560,730 + +2.3
560,730 + -0.9
560,730 + +0.2
560,730 + -1.0
560,730 + -1.2
560,730 + +0.2
560,730 + +1.6
560,731 - -0.2
560,731 - -0.7
560,731 - +0.9
560,731 - +0.6
560,731 - -0.3
560,731 - -0.2
560,731 - +0.1
560,731 - -0.1
560,903 + -1.1
560,903 + -0.3
560,903 + -1.5
560,903 + -1.3
560,903 + -1.9
560,903 + +0.6
560,903 + +0.8
560,903 + +0.3

Or see this region's nucleotide sequence