Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00511

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00509 and MPMX19_00510 are separated by 33 nucleotidesMPMX19_00510 and MPMX19_00511 are separated by 85 nucleotidesMPMX19_00511 and MPMX19_00512 are separated by 143 nucleotides MPMX19_00509: MPMX19_00509 - hypothetical protein, at 512,367 to 513,632 _00509 MPMX19_00510: MPMX19_00510 - Sensor histidine kinase RcsC, at 513,666 to 514,433 _00510 MPMX19_00511: MPMX19_00511 - hypothetical protein, at 514,519 to 515,010 _00511 MPMX19_00512: MPMX19_00512 - Sensor histidine kinase RcsC, at 515,154 to 516,764 _00512 Position (kb) 514 515 516Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 513.522 kb on + strandat 513.522 kb on + strandat 513.522 kb on + strandat 513.523 kb on - strandat 513.523 kb on - strandat 513.630 kb on + strandat 513.630 kb on + strandat 513.631 kb on - strandat 513.662 kb on + strandat 513.662 kb on + strandat 513.662 kb on + strandat 513.662 kb on + strandat 513.662 kb on + strandat 513.662 kb on + strandat 513.662 kb on + strandat 513.663 kb on - strandat 513.663 kb on - strandat 513.663 kb on - strandat 513.663 kb on - strandat 513.667 kb on + strandat 513.667 kb on + strandat 513.667 kb on + strandat 513.668 kb on - strandat 513.752 kb on + strand, within MPMX19_00510at 513.820 kb on + strand, within MPMX19_00510at 513.820 kb on + strand, within MPMX19_00510at 513.820 kb on + strand, within MPMX19_00510at 513.820 kb on + strand, within MPMX19_00510at 513.820 kb on + strand, within MPMX19_00510at 513.820 kb on + strand, within MPMX19_00510at 513.820 kb on + strand, within MPMX19_00510at 513.821 kb on - strand, within MPMX19_00510at 513.821 kb on - strand, within MPMX19_00510at 513.821 kb on - strand, within MPMX19_00510at 513.821 kb on - strand, within MPMX19_00510at 513.821 kb on - strand, within MPMX19_00510at 513.821 kb on - strand, within MPMX19_00510at 513.845 kb on + strand, within MPMX19_00510at 513.845 kb on + strand, within MPMX19_00510at 513.845 kb on + strand, within MPMX19_00510at 513.845 kb on + strand, within MPMX19_00510at 513.845 kb on + strand, within MPMX19_00510at 513.846 kb on - strand, within MPMX19_00510at 513.846 kb on - strand, within MPMX19_00510at 513.846 kb on - strand, within MPMX19_00510at 513.846 kb on - strand, within MPMX19_00510at 513.846 kb on - strand, within MPMX19_00510at 514.473 kb on + strandat 514.474 kb on - strandat 514.474 kb on - strandat 514.474 kb on - strandat 514.543 kb on - strandat 514.667 kb on + strand, within MPMX19_00511at 514.668 kb on - strand, within MPMX19_00511at 514.739 kb on + strand, within MPMX19_00511at 514.739 kb on + strand, within MPMX19_00511at 514.739 kb on + strand, within MPMX19_00511at 514.739 kb on + strand, within MPMX19_00511at 514.739 kb on + strand, within MPMX19_00511at 514.739 kb on + strand, within MPMX19_00511at 514.740 kb on - strand, within MPMX19_00511at 514.740 kb on - strand, within MPMX19_00511at 514.740 kb on - strand, within MPMX19_00511at 514.740 kb on - strand, within MPMX19_00511at 514.740 kb on - strand, within MPMX19_00511at 514.763 kb on + strand, within MPMX19_00511at 514.763 kb on + strand, within MPMX19_00511at 514.763 kb on + strand, within MPMX19_00511at 514.764 kb on - strand, within MPMX19_00511at 514.901 kb on + strand, within MPMX19_00511at 514.901 kb on + strand, within MPMX19_00511at 514.902 kb on - strand, within MPMX19_00511at 515.042 kb on + strandat 515.042 kb on + strandat 515.043 kb on - strandat 515.043 kb on - strandat 515.043 kb on - strandat 515.043 kb on - strandat 515.127 kb on + strandat 515.127 kb on + strandat 515.127 kb on + strandat 515.127 kb on + strandat 515.127 kb on + strandat 515.127 kb on + strandat 515.127 kb on + strandat 515.127 kb on + strandat 515.128 kb on - strandat 515.128 kb on - strandat 515.128 kb on - strandat 515.128 kb on - strandat 515.581 kb on - strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.773 kb on + strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.774 kb on - strand, within MPMX19_00512at 515.974 kb on + strand, within MPMX19_00512at 515.998 kb on + strand, within MPMX19_00512at 515.998 kb on + strand, within MPMX19_00512at 515.998 kb on + strand, within MPMX19_00512at 515.998 kb on + strand, within MPMX19_00512at 515.998 kb on + strand, within MPMX19_00512at 515.998 kb on + strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 515.999 kb on - strand, within MPMX19_00512at 516.009 kb on + strand, within MPMX19_00512at 516.009 kb on + strand, within MPMX19_00512at 516.009 kb on + strand, within MPMX19_00512at 516.010 kb on - strand, within MPMX19_00512at 516.010 kb on - strand, within MPMX19_00512at 516.010 kb on - strand, within MPMX19_00512at 516.010 kb on - strand, within MPMX19_00512at 516.010 kb on - strand, within MPMX19_00512

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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513,522 + +0.0
513,522 + +1.8
513,522 + +1.8
513,523 - +0.5
513,523 - -1.0
513,630 + +0.2
513,630 + -1.8
513,631 - +0.3
513,662 + -1.6
513,662 + +1.5
513,662 + -0.0
513,662 + -0.1
513,662 + -0.4
513,662 + -0.9
513,662 + -1.2
513,663 - +0.3
513,663 - +1.2
513,663 - +0.6
513,663 - -0.0
513,667 + -0.2
513,667 + +0.4
513,667 + -0.5
513,668 - -0.8
513,752 + MPMX19_00510 0.11 +0.0
513,820 + MPMX19_00510 0.20 -0.7
513,820 + MPMX19_00510 0.20 +0.4
513,820 + MPMX19_00510 0.20 +1.0
513,820 + MPMX19_00510 0.20 -0.5
513,820 + MPMX19_00510 0.20 -0.4
513,820 + MPMX19_00510 0.20 -0.1
513,820 + MPMX19_00510 0.20 -0.7
513,821 - MPMX19_00510 0.20 -0.7
513,821 - MPMX19_00510 0.20 -0.8
513,821 - MPMX19_00510 0.20 -1.5
513,821 - MPMX19_00510 0.20 -1.1
513,821 - MPMX19_00510 0.20 -1.5
513,821 - MPMX19_00510 0.20 -1.6
513,845 + MPMX19_00510 0.23 +1.0
513,845 + MPMX19_00510 0.23 +1.4
513,845 + MPMX19_00510 0.23 -1.2
513,845 + MPMX19_00510 0.23 +1.8
513,845 + MPMX19_00510 0.23 +0.7
513,846 - MPMX19_00510 0.23 -1.7
513,846 - MPMX19_00510 0.23 -1.2
513,846 - MPMX19_00510 0.23 -0.9
513,846 - MPMX19_00510 0.23 +0.5
513,846 - MPMX19_00510 0.23 +0.3
514,473 + -0.2
514,474 - -0.2
514,474 - -0.1
514,474 - +0.5
514,543 - +1.4
514,667 + MPMX19_00511 0.30 -0.6
514,668 - MPMX19_00511 0.30 -1.4
514,739 + MPMX19_00511 0.45 -0.2
514,739 + MPMX19_00511 0.45 -0.8
514,739 + MPMX19_00511 0.45 +0.2
514,739 + MPMX19_00511 0.45 -2.0
514,739 + MPMX19_00511 0.45 -0.5
514,739 + MPMX19_00511 0.45 -2.3
514,740 - MPMX19_00511 0.45 -0.5
514,740 - MPMX19_00511 0.45 -0.6
514,740 - MPMX19_00511 0.45 -0.2
514,740 - MPMX19_00511 0.45 -1.4
514,740 - MPMX19_00511 0.45 -0.2
514,763 + MPMX19_00511 0.50 -0.4
514,763 + MPMX19_00511 0.50 -1.5
514,763 + MPMX19_00511 0.50 -0.7
514,764 - MPMX19_00511 0.50 -2.8
514,901 + MPMX19_00511 0.78 +0.2
514,901 + MPMX19_00511 0.78 -1.2
514,902 - MPMX19_00511 0.78 -1.0
515,042 + -1.0
515,042 + -2.5
515,043 - -3.2
515,043 - +0.2
515,043 - -2.2
515,043 - -1.0
515,127 + +0.4
515,127 + -0.8
515,127 + +1.2
515,127 + -0.4
515,127 + +0.1
515,127 + +0.2
515,127 + +0.0
515,127 + -0.2
515,128 - +0.1
515,128 - +0.2
515,128 - +1.8
515,128 - -0.8
515,581 - MPMX19_00512 0.27 -0.1
515,773 + MPMX19_00512 0.38 -1.0
515,773 + MPMX19_00512 0.38 -0.6
515,773 + MPMX19_00512 0.38 -2.0
515,773 + MPMX19_00512 0.38 -0.2
515,773 + MPMX19_00512 0.38 -0.0
515,773 + MPMX19_00512 0.38 +1.1
515,773 + MPMX19_00512 0.38 -1.6
515,773 + MPMX19_00512 0.38 -0.9
515,773 + MPMX19_00512 0.38 -1.8
515,773 + MPMX19_00512 0.38 +0.2
515,773 + MPMX19_00512 0.38 +2.1
515,773 + MPMX19_00512 0.38 -0.6
515,773 + MPMX19_00512 0.38 -1.4
515,773 + MPMX19_00512 0.38 -0.0
515,773 + MPMX19_00512 0.38 +0.6
515,773 + MPMX19_00512 0.38 +1.1
515,773 + MPMX19_00512 0.38 +0.3
515,773 + MPMX19_00512 0.38 -0.5
515,774 - MPMX19_00512 0.38 -0.4
515,774 - MPMX19_00512 0.38 +0.8
515,774 - MPMX19_00512 0.38 -0.8
515,774 - MPMX19_00512 0.38 -0.8
515,774 - MPMX19_00512 0.38 -0.8
515,774 - MPMX19_00512 0.38 +0.2
515,774 - MPMX19_00512 0.38 +2.4
515,774 - MPMX19_00512 0.38 -1.2
515,774 - MPMX19_00512 0.38 -1.5
515,774 - MPMX19_00512 0.38 +1.0
515,774 - MPMX19_00512 0.38 -0.2
515,774 - MPMX19_00512 0.38 +0.4
515,774 - MPMX19_00512 0.38 -2.0
515,774 - MPMX19_00512 0.38 -0.2
515,774 - MPMX19_00512 0.38 -1.6
515,774 - MPMX19_00512 0.38 +1.1
515,774 - MPMX19_00512 0.38 -0.3
515,774 - MPMX19_00512 0.38 -0.9
515,774 - MPMX19_00512 0.38 +0.5
515,774 - MPMX19_00512 0.38 -1.2
515,974 + MPMX19_00512 0.51 +0.2
515,998 + MPMX19_00512 0.52 -0.8
515,998 + MPMX19_00512 0.52 -0.2
515,998 + MPMX19_00512 0.52 -0.8
515,998 + MPMX19_00512 0.52 +0.3
515,998 + MPMX19_00512 0.52 +1.3
515,998 + MPMX19_00512 0.52 +1.0
515,999 - MPMX19_00512 0.52 -0.2
515,999 - MPMX19_00512 0.52 -1.2
515,999 - MPMX19_00512 0.52 +0.1
515,999 - MPMX19_00512 0.52 -1.2
515,999 - MPMX19_00512 0.52 -0.1
515,999 - MPMX19_00512 0.52 +0.7
515,999 - MPMX19_00512 0.52 +1.4
515,999 - MPMX19_00512 0.52 -0.8
515,999 - MPMX19_00512 0.52 -2.0
515,999 - MPMX19_00512 0.52 +0.2
515,999 - MPMX19_00512 0.52 -1.2
515,999 - MPMX19_00512 0.52 +0.8
516,009 + MPMX19_00512 0.53 +0.1
516,009 + MPMX19_00512 0.53 -0.0
516,009 + MPMX19_00512 0.53 -1.6
516,010 - MPMX19_00512 0.53 +0.1
516,010 - MPMX19_00512 0.53 +0.8
516,010 - MPMX19_00512 0.53 +1.1
516,010 - MPMX19_00512 0.53 -0.1
516,010 - MPMX19_00512 0.53 -0.8

Or see this region's nucleotide sequence