Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00502 and MPMX19_00503 are separated by 249 nucleotides MPMX19_00503 and MPMX19_00504 are separated by 8 nucleotides MPMX19_00504 and MPMX19_00505 are separated by 343 nucleotides
MPMX19_00502: MPMX19_00502 - NAD kinase, at 504,424 to 505,212
_00502
MPMX19_00503: MPMX19_00503 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 505,462 to 507,777
_00503
MPMX19_00504: MPMX19_00504 - ATP-dependent Clp protease adapter protein ClpS, at 507,786 to 508,112
_00504
MPMX19_00505: MPMX19_00505 - hypothetical protein, at 508,456 to 508,935
_00505
Position (kb) 505
506
507
508 Strain fitness (log2 ratio) -2
-1
0
1
2 at 505.302 kb on - strand at 505.328 kb on + strand at 505.328 kb on + strand at 505.329 kb on - strand at 505.329 kb on - strand at 505.425 kb on - strand at 505.463 kb on + strand at 505.463 kb on + strand at 505.463 kb on + strand at 505.463 kb on + strand at 505.464 kb on - strand at 505.464 kb on - strand at 505.464 kb on - strand at 505.464 kb on - strand at 505.464 kb on - strand at 505.536 kb on - strand at 505.536 kb on - strand at 505.536 kb on - strand at 505.635 kb on - strand at 505.635 kb on - strand at 505.683 kb on - strand at 505.794 kb on + strand, within MPMX19_00503 at 506.147 kb on + strand, within MPMX19_00503 at 506.147 kb on + strand, within MPMX19_00503 at 506.148 kb on - strand, within MPMX19_00503 at 506.195 kb on + strand, within MPMX19_00503 at 506.195 kb on + strand, within MPMX19_00503 at 506.196 kb on - strand, within MPMX19_00503 at 506.603 kb on + strand, within MPMX19_00503 at 506.604 kb on - strand, within MPMX19_00503 at 506.604 kb on - strand, within MPMX19_00503 at 506.648 kb on + strand, within MPMX19_00503 at 506.649 kb on - strand, within MPMX19_00503 at 506.672 kb on + strand, within MPMX19_00503 at 506.672 kb on + strand, within MPMX19_00503 at 506.675 kb on + strand, within MPMX19_00503 at 506.778 kb on - strand, within MPMX19_00503 at 506.795 kb on + strand, within MPMX19_00503 at 506.795 kb on + strand, within MPMX19_00503 at 506.796 kb on - strand, within MPMX19_00503 at 507.131 kb on + strand, within MPMX19_00503 at 507.131 kb on + strand, within MPMX19_00503 at 507.132 kb on - strand, within MPMX19_00503 at 507.371 kb on + strand, within MPMX19_00503 at 507.371 kb on + strand, within MPMX19_00503 at 507.371 kb on + strand, within MPMX19_00503 at 507.372 kb on - strand, within MPMX19_00503 at 507.372 kb on - strand, within MPMX19_00503 at 507.372 kb on - strand, within MPMX19_00503 at 507.597 kb on - strand at 507.707 kb on + strand at 507.707 kb on + strand at 507.708 kb on - strand at 507.787 kb on + strand at 507.787 kb on + strand at 507.788 kb on - strand at 507.799 kb on - strand at 507.874 kb on + strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.997 kb on + strand, within MPMX19_00504 at 507.997 kb on + strand, within MPMX19_00504 at 507.998 kb on - strand, within MPMX19_00504 at 507.998 kb on - strand, within MPMX19_00504 at 508.024 kb on + strand, within MPMX19_00504 at 508.024 kb on + strand, within MPMX19_00504 at 508.025 kb on - strand, within MPMX19_00504 at 508.025 kb on - strand, within MPMX19_00504 at 508.025 kb on - strand, within MPMX19_00504 at 508.076 kb on + strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.157 kb on + strand at 508.157 kb on + strand at 508.157 kb on + strand at 508.157 kb on + strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.244 kb on + strand at 508.251 kb on + strand at 508.251 kb on + strand at 508.251 kb on + strand at 508.251 kb on + strand at 508.252 kb on - strand at 508.252 kb on - strand at 508.252 kb on - strand at 508.254 kb on + strand at 508.254 kb on + strand at 508.254 kb on + strand at 508.255 kb on - strand at 508.298 kb on + strand at 508.299 kb on - strand at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 505,302 - -0.9 505,328 + +0.2 505,328 + +0.4 505,329 - -0.1 505,329 - -0.4 505,425 - -1.7 505,463 + -0.4 505,463 + +0.2 505,463 + -0.7 505,463 + +0.5 505,464 - +0.1 505,464 - -0.3 505,464 - -0.6 505,464 - -1.4 505,464 - +0.2 505,536 - -0.0 505,536 - -1.0 505,536 - -1.0 505,635 - -1.6 505,635 - +0.2 505,683 - -1.6 505,794 + MPMX19_00503 0.14 -0.2 506,147 + MPMX19_00503 0.30 +0.2 506,147 + MPMX19_00503 0.30 +0.9 506,148 - MPMX19_00503 0.30 -1.4 506,195 + MPMX19_00503 0.32 +0.4 506,195 + MPMX19_00503 0.32 -0.6 506,196 - MPMX19_00503 0.32 -1.6 506,603 + MPMX19_00503 0.49 -0.6 506,604 - MPMX19_00503 0.49 -0.5 506,604 - MPMX19_00503 0.49 +0.3 506,648 + MPMX19_00503 0.51 -0.0 506,649 - MPMX19_00503 0.51 -1.2 506,672 + MPMX19_00503 0.52 -0.6 506,672 + MPMX19_00503 0.52 -1.4 506,675 + MPMX19_00503 0.52 -1.0 506,778 - MPMX19_00503 0.57 +1.4 506,795 + MPMX19_00503 0.58 -0.2 506,795 + MPMX19_00503 0.58 -1.6 506,796 - MPMX19_00503 0.58 -1.6 507,131 + MPMX19_00503 0.72 -1.0 507,131 + MPMX19_00503 0.72 +0.2 507,132 - MPMX19_00503 0.72 -0.6 507,371 + MPMX19_00503 0.82 +1.8 507,371 + MPMX19_00503 0.82 -0.0 507,371 + MPMX19_00503 0.82 -1.9 507,372 - MPMX19_00503 0.82 -1.2 507,372 - MPMX19_00503 0.82 -0.6 507,372 - MPMX19_00503 0.82 -1.4 507,597 - -1.0 507,707 + -1.7 507,707 + -2.5 507,708 - -0.6 507,787 + -0.1 507,787 + +0.0 507,788 - +1.2 507,799 - -1.0 507,874 + MPMX19_00504 0.27 -0.1 507,875 - MPMX19_00504 0.27 -0.6 507,875 - MPMX19_00504 0.27 +0.2 507,875 - MPMX19_00504 0.27 +1.3 507,875 - MPMX19_00504 0.27 +0.2 507,997 + MPMX19_00504 0.65 +0.6 507,997 + MPMX19_00504 0.65 -0.4 507,998 - MPMX19_00504 0.65 -2.2 507,998 - MPMX19_00504 0.65 -0.4 508,024 + MPMX19_00504 0.73 -2.3 508,024 + MPMX19_00504 0.73 -0.8 508,025 - MPMX19_00504 0.73 -1.2 508,025 - MPMX19_00504 0.73 -0.2 508,025 - MPMX19_00504 0.73 +2.1 508,076 + MPMX19_00504 0.89 -1.9 508,077 - MPMX19_00504 0.89 -0.5 508,077 - MPMX19_00504 0.89 -0.6 508,077 - MPMX19_00504 0.89 +0.2 508,077 - MPMX19_00504 0.89 -1.6 508,077 - MPMX19_00504 0.89 +0.7 508,077 - MPMX19_00504 0.89 -1.4 508,077 - MPMX19_00504 0.89 -1.0 508,157 + +0.5 508,157 + +0.3 508,157 + -0.8 508,157 + -1.2 508,158 - -0.4 508,158 - -0.8 508,158 - -0.0 508,158 - -0.1 508,158 - +1.2 508,158 - -1.7 508,158 - +1.8 508,158 - -0.6 508,158 - -0.5 508,158 - -0.9 508,244 + -1.7 508,251 + -0.8 508,251 + -0.1 508,251 + -2.1 508,251 + -0.8 508,252 - -0.6 508,252 - -1.1 508,252 - -2.1 508,254 + +0.2 508,254 + -0.5 508,254 + +1.0 508,255 - -1.0 508,298 + -0.3 508,299 - -2.5 508,604 + MPMX19_00505 0.31 +0.2 508,604 + MPMX19_00505 0.31 +0.3 508,604 + MPMX19_00505 0.31 +0.4 508,604 + MPMX19_00505 0.31 -0.9 508,604 + MPMX19_00505 0.31 +1.6 508,604 + MPMX19_00505 0.31 -0.4 508,604 + MPMX19_00505 0.31 -1.7 508,604 + MPMX19_00505 0.31 +0.6 508,604 + MPMX19_00505 0.31 -0.2 508,605 - MPMX19_00505 0.31 -2.4 508,605 - MPMX19_00505 0.31 -2.0 508,605 - MPMX19_00505 0.31 -0.0 508,605 - MPMX19_00505 0.31 -0.0 508,605 - MPMX19_00505 0.31 -0.4 508,605 - MPMX19_00505 0.31 -0.2 508,605 - MPMX19_00505 0.31 -1.0 508,605 - MPMX19_00505 0.31 -0.6 508,605 - MPMX19_00505 0.31 -0.4 508,605 - MPMX19_00505 0.31 -0.4 508,605 - MPMX19_00505 0.31 +1.5
Or see this region's nucleotide sequence