Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00501

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00499 and MPMX19_00500 are separated by 78 nucleotidesMPMX19_00500 and MPMX19_00501 are separated by 10 nucleotidesMPMX19_00501 and MPMX19_00502 are separated by 16 nucleotides MPMX19_00499: MPMX19_00499 - hypothetical protein, at 502,022 to 502,327 _00499 MPMX19_00500: MPMX19_00500 - hypothetical protein, at 502,406 to 503,209 _00500 MPMX19_00501: MPMX19_00501 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 503,220 to 504,407 _00501 MPMX19_00502: MPMX19_00502 - NAD kinase, at 504,424 to 505,212 _00502 Position (kb) 503 504 505Strain fitness (log2 ratio) -2 -1 0 1 2at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.748 kb on + strand, within MPMX19_00500at 502.749 kb on - strand, within MPMX19_00500at 502.749 kb on - strand, within MPMX19_00500at 502.749 kb on - strand, within MPMX19_00500at 502.749 kb on - strand, within MPMX19_00500at 502.775 kb on + strand, within MPMX19_00500at 502.775 kb on + strand, within MPMX19_00500at 502.775 kb on + strand, within MPMX19_00500at 502.776 kb on - strand, within MPMX19_00500at 502.776 kb on - strand, within MPMX19_00500at 503.802 kb on + strand, within MPMX19_00501at 503.802 kb on + strand, within MPMX19_00501at 503.802 kb on + strand, within MPMX19_00501at 503.802 kb on + strand, within MPMX19_00501at 503.803 kb on - strand, within MPMX19_00501at 503.803 kb on - strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.891 kb on + strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.892 kb on - strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.921 kb on + strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 503.922 kb on - strand, within MPMX19_00501at 504.136 kb on + strand, within MPMX19_00501at 504.137 kb on - strand, within MPMX19_00501at 504.137 kb on - strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.162 kb on + strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.163 kb on - strand, within MPMX19_00501at 504.210 kb on + strand, within MPMX19_00501at 504.210 kb on + strand, within MPMX19_00501at 504.210 kb on + strand, within MPMX19_00501at 504.210 kb on + strand, within MPMX19_00501at 504.210 kb on + strand, within MPMX19_00501at 504.210 kb on + strand, within MPMX19_00501at 504.211 kb on - strand, within MPMX19_00501at 504.211 kb on - strand, within MPMX19_00501at 504.211 kb on - strand, within MPMX19_00501at 504.211 kb on - strand, within MPMX19_00501at 504.211 kb on - strand, within MPMX19_00501at 504.211 kb on - strand, within MPMX19_00501at 504.211 kb on - strand, within MPMX19_00501at 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.342 kb on + strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.343 kb on - strandat 504.426 kb on - strandat 505.302 kb on - strandat 505.328 kb on + strandat 505.328 kb on + strandat 505.329 kb on - strandat 505.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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502,748 + MPMX19_00500 0.43 +0.8
502,748 + MPMX19_00500 0.43 +0.8
502,748 + MPMX19_00500 0.43 -1.1
502,748 + MPMX19_00500 0.43 -0.2
502,748 + MPMX19_00500 0.43 -0.2
502,748 + MPMX19_00500 0.43 +0.3
502,748 + MPMX19_00500 0.43 -1.0
502,748 + MPMX19_00500 0.43 -0.7
502,749 - MPMX19_00500 0.43 +0.2
502,749 - MPMX19_00500 0.43 +0.3
502,749 - MPMX19_00500 0.43 -1.0
502,749 - MPMX19_00500 0.43 -0.2
502,775 + MPMX19_00500 0.46 +0.3
502,775 + MPMX19_00500 0.46 -0.5
502,775 + MPMX19_00500 0.46 +0.2
502,776 - MPMX19_00500 0.46 -1.0
502,776 - MPMX19_00500 0.46 -0.6
503,802 + MPMX19_00501 0.49 -0.7
503,802 + MPMX19_00501 0.49 -0.5
503,802 + MPMX19_00501 0.49 -1.0
503,802 + MPMX19_00501 0.49 -1.4
503,803 - MPMX19_00501 0.49 +0.4
503,803 - MPMX19_00501 0.49 -0.6
503,891 + MPMX19_00501 0.56 +0.1
503,891 + MPMX19_00501 0.56 -1.2
503,891 + MPMX19_00501 0.56 -1.3
503,891 + MPMX19_00501 0.56 -0.2
503,891 + MPMX19_00501 0.56 +0.3
503,891 + MPMX19_00501 0.56 +0.6
503,891 + MPMX19_00501 0.56 -2.0
503,891 + MPMX19_00501 0.56 +0.2
503,891 + MPMX19_00501 0.56 -1.0
503,891 + MPMX19_00501 0.56 -2.4
503,891 + MPMX19_00501 0.56 -0.7
503,892 - MPMX19_00501 0.57 -1.9
503,892 - MPMX19_00501 0.57 -0.8
503,892 - MPMX19_00501 0.57 -0.4
503,892 - MPMX19_00501 0.57 +0.1
503,892 - MPMX19_00501 0.57 -0.4
503,892 - MPMX19_00501 0.57 +0.4
503,892 - MPMX19_00501 0.57 -1.0
503,892 - MPMX19_00501 0.57 -0.2
503,892 - MPMX19_00501 0.57 +0.1
503,892 - MPMX19_00501 0.57 -1.4
503,892 - MPMX19_00501 0.57 -1.0
503,892 - MPMX19_00501 0.57 -0.2
503,921 + MPMX19_00501 0.59 +0.9
503,921 + MPMX19_00501 0.59 -1.3
503,921 + MPMX19_00501 0.59 -0.6
503,921 + MPMX19_00501 0.59 +0.7
503,921 + MPMX19_00501 0.59 +0.3
503,921 + MPMX19_00501 0.59 -1.8
503,921 + MPMX19_00501 0.59 -2.1
503,921 + MPMX19_00501 0.59 -0.0
503,921 + MPMX19_00501 0.59 -1.3
503,921 + MPMX19_00501 0.59 -1.1
503,921 + MPMX19_00501 0.59 -1.8
503,921 + MPMX19_00501 0.59 -1.8
503,921 + MPMX19_00501 0.59 +0.2
503,922 - MPMX19_00501 0.59 -0.8
503,922 - MPMX19_00501 0.59 +0.2
503,922 - MPMX19_00501 0.59 +1.0
503,922 - MPMX19_00501 0.59 -0.4
503,922 - MPMX19_00501 0.59 +0.4
503,922 - MPMX19_00501 0.59 +1.2
503,922 - MPMX19_00501 0.59 -1.2
503,922 - MPMX19_00501 0.59 -0.1
503,922 - MPMX19_00501 0.59 +1.0
503,922 - MPMX19_00501 0.59 -0.6
503,922 - MPMX19_00501 0.59 -0.6
503,922 - MPMX19_00501 0.59 -0.7
503,922 - MPMX19_00501 0.59 -0.7
503,922 - MPMX19_00501 0.59 +0.5
503,922 - MPMX19_00501 0.59 -1.0
503,922 - MPMX19_00501 0.59 -1.2
504,136 + MPMX19_00501 0.77 +0.0
504,137 - MPMX19_00501 0.77 -0.6
504,137 - MPMX19_00501 0.77 +0.8
504,162 + MPMX19_00501 0.79 +0.8
504,162 + MPMX19_00501 0.79 -0.4
504,162 + MPMX19_00501 0.79 +0.8
504,162 + MPMX19_00501 0.79 -0.2
504,162 + MPMX19_00501 0.79 -0.3
504,162 + MPMX19_00501 0.79 +0.2
504,162 + MPMX19_00501 0.79 -2.1
504,162 + MPMX19_00501 0.79 -0.8
504,162 + MPMX19_00501 0.79 +0.8
504,162 + MPMX19_00501 0.79 -2.6
504,163 - MPMX19_00501 0.79 -1.4
504,163 - MPMX19_00501 0.79 -1.2
504,163 - MPMX19_00501 0.79 +0.6
504,163 - MPMX19_00501 0.79 -1.2
504,163 - MPMX19_00501 0.79 -0.9
504,163 - MPMX19_00501 0.79 -2.2
504,163 - MPMX19_00501 0.79 -0.6
504,163 - MPMX19_00501 0.79 +0.8
504,163 - MPMX19_00501 0.79 -0.3
504,210 + MPMX19_00501 0.83 -0.2
504,210 + MPMX19_00501 0.83 -0.4
504,210 + MPMX19_00501 0.83 +0.9
504,210 + MPMX19_00501 0.83 +1.8
504,210 + MPMX19_00501 0.83 -0.6
504,210 + MPMX19_00501 0.83 -0.4
504,211 - MPMX19_00501 0.83 -1.8
504,211 - MPMX19_00501 0.83 -1.4
504,211 - MPMX19_00501 0.83 -2.5
504,211 - MPMX19_00501 0.83 +0.1
504,211 - MPMX19_00501 0.83 -0.6
504,211 - MPMX19_00501 0.83 +1.8
504,211 - MPMX19_00501 0.83 -1.4
504,342 + -1.0
504,342 + -0.3
504,342 + -1.7
504,342 + -1.4
504,342 + +0.8
504,342 + -0.1
504,342 + +1.4
504,342 + -1.8
504,342 + -0.4
504,342 + +1.2
504,342 + -0.1
504,342 + +1.2
504,342 + -0.8
504,342 + -1.0
504,342 + +0.8
504,342 + -0.4
504,342 + -0.3
504,342 + -0.0
504,343 - -0.6
504,343 - -0.1
504,343 - -0.1
504,343 - -1.6
504,343 - +0.2
504,343 - -2.0
504,343 - -1.6
504,343 - -1.1
504,343 - -1.4
504,343 - -0.4
504,343 - +0.4
504,343 - -0.6
504,343 - +0.2
504,343 - -0.1
504,343 - -0.6
504,343 - -2.4
504,343 - -1.0
504,343 - +2.0
504,343 - +0.7
504,343 - -0.2
504,343 - +0.6
504,343 - -0.8
504,343 - -0.4
504,343 - -0.6
504,426 - -0.3
505,302 - -0.9
505,328 + +0.2
505,328 + +0.4
505,329 - -0.1
505,329 - -0.4

Or see this region's nucleotide sequence