Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00428 and MPMX19_00429 are separated by 118 nucleotides MPMX19_00429 and MPMX19_00430 are separated by 111 nucleotides MPMX19_00430 and MPMX19_00431 are separated by 12 nucleotides MPMX19_00431 and MPMX19_00432 are separated by 313 nucleotides MPMX19_00432 and MPMX19_00433 are separated by 214 nucleotides
MPMX19_00428: MPMX19_00428 - hypothetical protein, at 429,281 to 430,783
_00428
MPMX19_00429: MPMX19_00429 - hypothetical protein, at 430,902 to 431,135
_00429
MPMX19_00430: MPMX19_00430 - hypothetical protein, at 431,247 to 431,609
_00430
MPMX19_00431: MPMX19_00431 - hypothetical protein, at 431,622 to 432,335
_00431
MPMX19_00432: MPMX19_00432 - hypothetical protein, at 432,649 to 432,861
_00432
MPMX19_00433: MPMX19_00433 - Lysine/ornithine decarboxylase, at 433,076 to 434,212
_00433
Position (kb) 431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.859 kb on + strand at 430.861 kb on + strand at 430.862 kb on - strand at 430.869 kb on + strand at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.218 kb on + strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.235 kb on + strand at 431.235 kb on + strand at 431.235 kb on + strand at 431.235 kb on + strand at 431.266 kb on + strand at 431.266 kb on + strand at 431.266 kb on + strand at 431.266 kb on + strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.404 kb on + strand, within MPMX19_00430 at 431.404 kb on + strand, within MPMX19_00430 at 431.404 kb on + strand, within MPMX19_00430 at 431.404 kb on + strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.420 kb on - strand, within MPMX19_00430 at 431.420 kb on - strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.675 kb on - strand at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.730 kb on - strand, within MPMX19_00431 at 431.730 kb on - strand, within MPMX19_00431 at 431.842 kb on + strand, within MPMX19_00431 at 431.842 kb on + strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 432.136 kb on + strand, within MPMX19_00431 at 432.136 kb on + strand, within MPMX19_00431 at 432.136 kb on + strand, within MPMX19_00431 at 432.137 kb on - strand, within MPMX19_00431 at 432.137 kb on - strand, within MPMX19_00431 at 432.137 kb on - strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.380 kb on + strand at 432.381 kb on - strand at 432.381 kb on - strand at 432.459 kb on + strand at 432.459 kb on + strand at 432.570 kb on + strand at 432.570 kb on + strand at 432.570 kb on + strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.574 kb on + strand at 432.574 kb on + strand at 432.574 kb on + strand at 432.574 kb on + strand at 432.574 kb on + strand at 432.574 kb on + strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.577 kb on - strand at 432.577 kb on - strand at 432.776 kb on - strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.870 kb on - strand at 432.939 kb on + strand at 432.939 kb on + strand at 432.939 kb on + strand at 432.940 kb on - strand at 432.940 kb on - strand at 432.940 kb on - strand at 433.086 kb on + strand at 433.086 kb on + strand at 433.086 kb on + strand at 433.086 kb on + strand at 433.086 kb on + strand at 433.087 kb on - strand at 433.087 kb on - strand at 433.128 kb on + strand at 433.128 kb on + strand at 433.129 kb on - strand at 433.140 kb on + strand at 433.140 kb on + strand at 433.141 kb on - strand at 433.201 kb on - strand, within MPMX19_00433 at 433.201 kb on - strand, within MPMX19_00433 at 433.201 kb on - strand, within MPMX19_00433 at 433.215 kb on + strand, within MPMX19_00433 at 433.215 kb on + strand, within MPMX19_00433 at 433.216 kb on - strand, within MPMX19_00433 at 433.216 kb on - strand, within MPMX19_00433 at 433.216 kb on - strand, within MPMX19_00433 at 433.216 kb on - strand, within MPMX19_00433
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 430,781 + -0.6 430,781 + -1.5 430,781 + -0.2 430,781 + -0.2 430,781 + +1.1 430,781 + +0.3 430,781 + -0.2 430,781 + +0.6 430,781 + -0.6 430,781 + -1.2 430,781 + -0.9 430,781 + +0.2 430,782 - -2.6 430,782 - +1.2 430,782 - -0.3 430,782 - -0.2 430,782 - -0.3 430,782 - -0.3 430,782 - -0.5 430,782 - -0.8 430,782 - +0.2 430,782 - -0.8 430,859 + +1.2 430,861 + +0.2 430,862 - -0.5 430,869 + +0.6 430,957 + MPMX19_00429 0.24 -0.6 430,957 + MPMX19_00429 0.24 -0.9 430,957 + MPMX19_00429 0.24 -0.2 430,957 + MPMX19_00429 0.24 -0.8 430,957 + MPMX19_00429 0.24 -1.8 430,958 - MPMX19_00429 0.24 -2.0 430,958 - MPMX19_00429 0.24 +0.1 430,958 - MPMX19_00429 0.24 -0.8 430,958 - MPMX19_00429 0.24 +0.9 430,958 - MPMX19_00429 0.24 -0.3 430,958 - MPMX19_00429 0.24 -0.9 430,958 - MPMX19_00429 0.24 +0.4 431,217 + +0.7 431,217 + -0.6 431,217 + -0.1 431,217 + +0.1 431,217 + +0.9 431,217 + -1.2 431,217 + -1.7 431,217 + -0.3 431,217 + +1.0 431,218 + -0.3 431,218 - -0.6 431,218 - -0.4 431,218 - -0.4 431,218 - -0.2 431,218 - +1.5 431,218 - +0.1 431,218 - -0.1 431,235 + +1.4 431,235 + -0.2 431,235 + -0.4 431,235 + -0.3 431,266 + -0.7 431,266 + -0.9 431,266 + +1.4 431,266 + +0.8 431,267 - -1.2 431,267 - -1.8 431,267 - +0.1 431,267 - -1.3 431,267 - -1.3 431,267 - +0.5 431,267 - -0.2 431,267 - -0.4 431,267 - -0.5 431,267 - +0.5 431,267 - -0.2 431,404 + MPMX19_00430 0.43 +0.4 431,404 + MPMX19_00430 0.43 -0.7 431,404 + MPMX19_00430 0.43 +0.2 431,404 + MPMX19_00430 0.43 +0.2 431,405 - MPMX19_00430 0.44 +0.2 431,405 - MPMX19_00430 0.44 -1.5 431,405 - MPMX19_00430 0.44 -1.5 431,405 - MPMX19_00430 0.44 +0.3 431,405 - MPMX19_00430 0.44 +0.7 431,405 - MPMX19_00430 0.44 -0.5 431,405 - MPMX19_00430 0.44 -1.1 431,405 - MPMX19_00430 0.44 -0.8 431,419 + MPMX19_00430 0.47 -0.8 431,419 + MPMX19_00430 0.47 +0.1 431,419 + MPMX19_00430 0.47 +0.8 431,419 + MPMX19_00430 0.47 -0.9 431,419 + MPMX19_00430 0.47 -0.6 431,420 - MPMX19_00430 0.48 +0.6 431,420 - MPMX19_00430 0.48 -0.5 431,488 + MPMX19_00430 0.66 -0.4 431,488 + MPMX19_00430 0.66 +0.1 431,488 + MPMX19_00430 0.66 -1.5 431,488 + MPMX19_00430 0.66 -1.5 431,488 + MPMX19_00430 0.66 -0.7 431,488 + MPMX19_00430 0.66 +1.5 431,488 + MPMX19_00430 0.66 -0.4 431,488 + MPMX19_00430 0.66 +0.5 431,488 + MPMX19_00430 0.66 +0.8 431,488 + MPMX19_00430 0.66 -0.4 431,488 + MPMX19_00430 0.66 -1.2 431,488 + MPMX19_00430 0.66 -0.4 431,489 - MPMX19_00430 0.67 -1.6 431,489 - MPMX19_00430 0.67 -2.6 431,489 - MPMX19_00430 0.67 -0.3 431,489 - MPMX19_00430 0.67 +0.2 431,489 - MPMX19_00430 0.67 -2.5 431,489 - MPMX19_00430 0.67 -1.4 431,489 - MPMX19_00430 0.67 +0.6 431,489 - MPMX19_00430 0.67 +1.0 431,489 - MPMX19_00430 0.67 -0.2 431,489 - MPMX19_00430 0.67 +0.2 431,489 - MPMX19_00430 0.67 -0.7 431,675 - -1.6 431,722 + MPMX19_00431 0.14 +0.6 431,722 + MPMX19_00431 0.14 -0.4 431,722 + MPMX19_00431 0.14 +0.4 431,722 + MPMX19_00431 0.14 -1.3 431,722 + MPMX19_00431 0.14 -1.8 431,722 + MPMX19_00431 0.14 -1.0 431,722 + MPMX19_00431 0.14 -0.3 431,722 + MPMX19_00431 0.14 -0.8 431,722 + MPMX19_00431 0.14 -0.9 431,722 + MPMX19_00431 0.14 +1.0 431,723 - MPMX19_00431 0.14 -0.4 431,723 - MPMX19_00431 0.14 -1.2 431,723 - MPMX19_00431 0.14 -2.5 431,723 - MPMX19_00431 0.14 -0.6 431,723 - MPMX19_00431 0.14 -0.4 431,723 - MPMX19_00431 0.14 -1.0 431,723 - MPMX19_00431 0.14 -1.0 431,723 - MPMX19_00431 0.14 -0.4 431,729 + MPMX19_00431 0.15 -0.6 431,729 + MPMX19_00431 0.15 +1.2 431,729 + MPMX19_00431 0.15 -0.0 431,729 + MPMX19_00431 0.15 -2.4 431,730 - MPMX19_00431 0.15 +0.2 431,730 - MPMX19_00431 0.15 +1.5 431,842 + MPMX19_00431 0.31 -0.4 431,842 + MPMX19_00431 0.31 -1.8 431,843 - MPMX19_00431 0.31 -0.8 431,843 - MPMX19_00431 0.31 +0.0 431,843 - MPMX19_00431 0.31 +0.0 431,843 - MPMX19_00431 0.31 +0.0 431,843 - MPMX19_00431 0.31 +0.6 432,136 + MPMX19_00431 0.72 +1.0 432,136 + MPMX19_00431 0.72 -0.8 432,136 + MPMX19_00431 0.72 -0.4 432,137 - MPMX19_00431 0.72 -0.6 432,137 - MPMX19_00431 0.72 -1.9 432,137 - MPMX19_00431 0.72 -0.1 432,142 + MPMX19_00431 0.73 -0.8 432,142 + MPMX19_00431 0.73 +1.0 432,142 + MPMX19_00431 0.73 -1.1 432,142 + MPMX19_00431 0.73 -0.2 432,142 + MPMX19_00431 0.73 -1.8 432,142 + MPMX19_00431 0.73 -0.5 432,142 + MPMX19_00431 0.73 -1.4 432,142 + MPMX19_00431 0.73 +0.5 432,142 + MPMX19_00431 0.73 -1.4 432,142 + MPMX19_00431 0.73 +0.6 432,142 + MPMX19_00431 0.73 +1.8 432,142 + MPMX19_00431 0.73 -0.7 432,142 + MPMX19_00431 0.73 -0.8 432,142 + MPMX19_00431 0.73 +0.2 432,142 + MPMX19_00431 0.73 -1.3 432,142 + MPMX19_00431 0.73 -1.8 432,142 + MPMX19_00431 0.73 +0.9 432,142 + MPMX19_00431 0.73 +2.5 432,143 - MPMX19_00431 0.73 -0.7 432,143 - MPMX19_00431 0.73 -0.3 432,143 - MPMX19_00431 0.73 -0.3 432,143 - MPMX19_00431 0.73 -1.5 432,143 - MPMX19_00431 0.73 -1.0 432,143 - MPMX19_00431 0.73 +0.2 432,143 - MPMX19_00431 0.73 -0.8 432,143 - MPMX19_00431 0.73 +0.8 432,143 - MPMX19_00431 0.73 -0.5 432,143 - MPMX19_00431 0.73 -1.9 432,143 - MPMX19_00431 0.73 +0.0 432,143 - MPMX19_00431 0.73 +0.8 432,143 - MPMX19_00431 0.73 -1.1 432,380 + -0.7 432,381 - -0.8 432,381 - -1.9 432,459 + +0.4 432,459 + +0.6 432,570 + -1.4 432,570 + -1.4 432,570 + -2.5 432,571 - -0.2 432,571 - +0.5 432,571 - +0.6 432,571 - -0.8 432,571 - -0.5 432,571 - -0.3 432,571 - -1.3 432,574 + -0.8 432,574 + -0.4 432,574 + -0.0 432,574 + -0.9 432,574 + -2.2 432,574 + -1.4 432,575 - +0.8 432,575 - -0.2 432,575 - -0.9 432,575 - -1.2 432,575 - -1.8 432,575 - -0.5 432,575 - -0.6 432,575 - -3.1 432,575 - +1.4 432,577 - -1.0 432,577 - -1.5 432,776 - MPMX19_00432 0.60 -0.0 432,789 + MPMX19_00432 0.66 +1.3 432,789 + MPMX19_00432 0.66 +0.4 432,789 + MPMX19_00432 0.66 -0.5 432,789 + MPMX19_00432 0.66 -0.2 432,789 + MPMX19_00432 0.66 +0.8 432,789 + MPMX19_00432 0.66 -1.9 432,789 + MPMX19_00432 0.66 -1.5 432,789 + MPMX19_00432 0.66 -1.4 432,789 + MPMX19_00432 0.66 +0.2 432,789 + MPMX19_00432 0.66 -0.8 432,789 + MPMX19_00432 0.66 -1.7 432,790 - MPMX19_00432 0.66 -1.8 432,790 - MPMX19_00432 0.66 +0.5 432,790 - MPMX19_00432 0.66 -0.2 432,790 - MPMX19_00432 0.66 -0.4 432,790 - MPMX19_00432 0.66 -1.1 432,790 - MPMX19_00432 0.66 -1.7 432,790 - MPMX19_00432 0.66 -1.2 432,870 - -1.2 432,939 + -0.7 432,939 + -1.2 432,939 + +0.2 432,940 - -1.3 432,940 - -1.6 432,940 - +1.0 433,086 + -0.8 433,086 + -1.7 433,086 + -1.4 433,086 + -1.0 433,086 + -0.5 433,087 - +0.6 433,087 - +0.6 433,128 + -0.0 433,128 + +0.0 433,129 - -0.7 433,140 + +1.2 433,140 + -1.3 433,141 - +0.2 433,201 - MPMX19_00433 0.11 -1.4 433,201 - MPMX19_00433 0.11 +1.1 433,201 - MPMX19_00433 0.11 +0.2 433,215 + MPMX19_00433 0.12 -0.1 433,215 + MPMX19_00433 0.12 -0.0 433,216 - MPMX19_00433 0.12 -1.1 433,216 - MPMX19_00433 0.12 +1.0 433,216 - MPMX19_00433 0.12 -1.1 433,216 - MPMX19_00433 0.12 -0.1
Or see this region's nucleotide sequence