Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00333 and MPMX19_00334 are separated by 32 nucleotides MPMX19_00334 and MPMX19_00335 are separated by 39 nucleotides MPMX19_00335 and MPMX19_00336 are separated by 342 nucleotides
MPMX19_00333: MPMX19_00333 - Acetylglutamate kinase, at 335,681 to 336,580
_00333
MPMX19_00334: MPMX19_00334 - hypothetical protein, at 336,613 to 336,897
_00334
MPMX19_00335: MPMX19_00335 - Magnesium transport protein CorA, at 336,937 to 337,920
_00335
MPMX19_00336: MPMX19_00336 - Phosphomethylpyrimidine synthase, at 338,263 to 339,990
_00336
Position (kb) 336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 336.721 kb on + strand, within MPMX19_00334 at 336.721 kb on + strand, within MPMX19_00334 at 336.721 kb on + strand, within MPMX19_00334 at 336.721 kb on + strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.896 kb on - strand at 336.896 kb on - strand at 336.896 kb on - strand at 336.896 kb on - strand at 337.430 kb on - strand, within MPMX19_00335 at 337.654 kb on + strand, within MPMX19_00335 at 337.654 kb on + strand, within MPMX19_00335 at 337.654 kb on + strand, within MPMX19_00335 at 337.655 kb on - strand, within MPMX19_00335 at 337.655 kb on - strand, within MPMX19_00335 at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.918 kb on + strand at 337.918 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.035 kb on - strand at 338.035 kb on - strand at 338.035 kb on - strand at 338.035 kb on - strand at 338.035 kb on - strand at 338.035 kb on - strand at 338.102 kb on + strand at 338.205 kb on + strand at 338.205 kb on + strand at 338.205 kb on + strand at 338.206 kb on - strand at 338.206 kb on - strand at 338.206 kb on - strand at 338.268 kb on + strand at 338.268 kb on + strand at 338.269 kb on - strand at 338.269 kb on - strand at 338.269 kb on - strand at 338.269 kb on - strand at 338.269 kb on - strand at 338.269 kb on - strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.434 kb on + strand at 338.434 kb on + strand at 338.434 kb on + strand at 338.434 kb on + strand at 338.435 kb on - strand at 338.435 kb on - strand at 338.578 kb on + strand, within MPMX19_00336 at 338.579 kb on - strand, within MPMX19_00336 at 338.579 kb on - strand, within MPMX19_00336 at 338.579 kb on - strand, within MPMX19_00336 at 338.579 kb on - strand, within MPMX19_00336 at 338.579 kb on - strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 336,721 + MPMX19_00334 0.38 +0.0 336,721 + MPMX19_00334 0.38 +0.8 336,721 + MPMX19_00334 0.38 +0.7 336,721 + MPMX19_00334 0.38 +1.6 336,722 - MPMX19_00334 0.38 +0.2 336,722 - MPMX19_00334 0.38 -1.2 336,722 - MPMX19_00334 0.38 +0.1 336,722 - MPMX19_00334 0.38 +0.1 336,895 + -0.2 336,895 + -0.7 336,895 + -0.6 336,895 + -0.4 336,895 + -0.2 336,895 + -0.0 336,895 + +1.7 336,895 + -1.2 336,895 + -0.6 336,896 - -0.3 336,896 - +1.5 336,896 - -1.0 336,896 - -0.0 337,430 - MPMX19_00335 0.50 -1.0 337,654 + MPMX19_00335 0.73 +0.7 337,654 + MPMX19_00335 0.73 +0.4 337,654 + MPMX19_00335 0.73 -0.8 337,655 - MPMX19_00335 0.73 -0.6 337,655 - MPMX19_00335 0.73 -0.4 337,894 + -0.6 337,894 + -0.2 337,894 + +0.2 337,894 + -1.2 337,894 + +0.6 337,894 + -2.2 337,895 - -0.3 337,895 - +0.1 337,895 - -2.2 337,895 - +1.5 337,895 - +0.4 337,895 - -0.2 337,895 - +0.2 337,895 - +0.2 337,895 - -2.1 337,918 + -0.5 337,918 + +0.2 338,034 + -1.0 338,034 + -1.4 338,034 + +0.3 338,034 + -0.2 338,034 + +0.8 338,034 + -0.9 338,034 + -1.7 338,035 - -0.7 338,035 - +0.2 338,035 - -0.3 338,035 - +1.2 338,035 - -0.4 338,035 - -1.0 338,102 + +0.0 338,205 + +1.2 338,205 + +1.2 338,205 + +0.1 338,206 - +0.2 338,206 - +1.3 338,206 - +0.2 338,268 + -0.4 338,268 + -0.7 338,269 - -0.5 338,269 - +1.0 338,269 - +0.4 338,269 - -0.8 338,269 - +2.4 338,269 - -1.0 338,416 + -0.2 338,416 + -0.5 338,416 + -0.4 338,416 + -2.8 338,416 + -0.6 338,416 + -1.0 338,416 + -0.7 338,416 + -0.8 338,417 - -0.0 338,417 - +0.7 338,417 - -2.3 338,417 - -0.7 338,417 - -0.3 338,417 - -0.9 338,417 - -0.5 338,417 - +0.5 338,417 - -1.8 338,434 + -0.5 338,434 + -0.2 338,434 + -0.3 338,434 + -1.5 338,435 - +0.2 338,435 - -2.9 338,578 + MPMX19_00336 0.18 +0.2 338,579 - MPMX19_00336 0.18 -0.6 338,579 - MPMX19_00336 0.18 -1.4 338,579 - MPMX19_00336 0.18 -1.3 338,579 - MPMX19_00336 0.18 +0.7 338,579 - MPMX19_00336 0.18 -0.2 338,614 + MPMX19_00336 0.20 +0.0 338,614 + MPMX19_00336 0.20 +0.8 338,614 + MPMX19_00336 0.20 -0.4 338,614 + MPMX19_00336 0.20 -0.3 338,614 + MPMX19_00336 0.20 -0.9 338,614 + MPMX19_00336 0.20 -0.2 338,614 + MPMX19_00336 0.20 -0.4 338,614 + MPMX19_00336 0.20 +0.4 338,614 + MPMX19_00336 0.20 -0.3 338,614 + MPMX19_00336 0.20 +0.4 338,614 + MPMX19_00336 0.20 -0.5 338,614 + MPMX19_00336 0.20 -0.8 338,614 + MPMX19_00336 0.20 -0.5 338,614 + MPMX19_00336 0.20 -0.3 338,614 + MPMX19_00336 0.20 -0.0 338,614 + MPMX19_00336 0.20 -0.3 338,614 + MPMX19_00336 0.20 +1.2 338,614 + MPMX19_00336 0.20 -0.5 338,615 - MPMX19_00336 0.20 +0.4 338,615 - MPMX19_00336 0.20 -2.8 338,615 - MPMX19_00336 0.20 -0.8 338,615 - MPMX19_00336 0.20 -0.8 338,615 - MPMX19_00336 0.20 +0.2 338,615 - MPMX19_00336 0.20 +1.2 338,615 - MPMX19_00336 0.20 +0.1 338,615 - MPMX19_00336 0.20 -2.0 338,615 - MPMX19_00336 0.20 +0.5 338,615 - MPMX19_00336 0.20 -0.5 338,615 - MPMX19_00336 0.20 +0.2 338,615 - MPMX19_00336 0.20 -1.9 338,615 - MPMX19_00336 0.20 -1.3 338,615 - MPMX19_00336 0.20 -1.5
Or see this region's nucleotide sequence