Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00294 and MPMX19_00295 overlap by 4 nucleotides MPMX19_00295 and MPMX19_00296 are separated by 236 nucleotides MPMX19_00296 and MPMX19_00297 are separated by 40 nucleotides
MPMX19_00294: MPMX19_00294 - Adaptive-response sensory-kinase SasA, at 293,488 to 294,945
_00294
MPMX19_00295: MPMX19_00295 - Transcriptional regulatory protein QseB, at 294,942 to 295,655
_00295
MPMX19_00296: MPMX19_00296 - (S)-sulfolactate dehydrogenase, at 295,892 to 296,845
_00296
MPMX19_00297: MPMX19_00297 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 296,886 to 297,554
_00297
Position (kb) 295
296
297 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.004 kb on - strand at 295.004 kb on - strand at 295.004 kb on - strand at 295.004 kb on - strand at 295.004 kb on - strand at 295.004 kb on - strand at 295.120 kb on + strand, within MPMX19_00295 at 295.120 kb on + strand, within MPMX19_00295 at 295.121 kb on - strand, within MPMX19_00295 at 295.121 kb on - strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.831 kb on + strand at 295.832 kb on - strand at 295.832 kb on - strand at 295.832 kb on - strand at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.064 kb on + strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.065 kb on - strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.223 kb on + strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.224 kb on - strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.263 kb on + strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.264 kb on - strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.490 kb on + strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.491 kb on - strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.733 kb on + strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.734 kb on - strand, within MPMX19_00296 at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.754 kb on + strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.755 kb on - strand at 296.769 kb on + strand at 296.769 kb on + strand at 296.769 kb on + strand at 296.769 kb on + strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.770 kb on - strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.914 kb on + strand at 296.915 kb on - strand at 296.915 kb on - strand at 296.915 kb on - strand at 296.971 kb on + strand, within MPMX19_00297 at 296.972 kb on - strand, within MPMX19_00297 at 297.353 kb on + strand, within MPMX19_00297 at 297.354 kb on - strand, within MPMX19_00297 at 297.626 kb on - strand at 297.760 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 295,003 + +0.1 295,003 + +0.4 295,003 + +1.0 295,003 + -1.1 295,003 + +0.4 295,003 + -1.0 295,003 + -0.3 295,003 + -0.2 295,003 + +0.2 295,003 + -1.2 295,003 + +1.8 295,004 - +1.8 295,004 - -0.2 295,004 - +1.1 295,004 - -0.2 295,004 - -0.5 295,004 - -2.1 295,120 + MPMX19_00295 0.25 -1.5 295,120 + MPMX19_00295 0.25 -2.0 295,121 - MPMX19_00295 0.25 +1.1 295,121 - MPMX19_00295 0.25 -0.2 295,363 + MPMX19_00295 0.59 -2.3 295,363 + MPMX19_00295 0.59 -0.3 295,363 + MPMX19_00295 0.59 -0.8 295,363 + MPMX19_00295 0.59 -2.4 295,363 + MPMX19_00295 0.59 -0.3 295,363 + MPMX19_00295 0.59 -0.0 295,363 + MPMX19_00295 0.59 -1.5 295,363 + MPMX19_00295 0.59 -0.2 295,363 + MPMX19_00295 0.59 +0.7 295,363 + MPMX19_00295 0.59 -0.5 295,363 + MPMX19_00295 0.59 +2.1 295,364 - MPMX19_00295 0.59 -0.0 295,364 - MPMX19_00295 0.59 -1.2 295,364 - MPMX19_00295 0.59 +0.0 295,364 - MPMX19_00295 0.59 -0.2 295,364 - MPMX19_00295 0.59 +0.3 295,364 - MPMX19_00295 0.59 -0.1 295,831 + +0.2 295,832 - -0.2 295,832 - +1.5 295,832 - +0.4 296,064 + MPMX19_00296 0.18 +0.3 296,064 + MPMX19_00296 0.18 +0.5 296,064 + MPMX19_00296 0.18 +0.8 296,064 + MPMX19_00296 0.18 +0.3 296,064 + MPMX19_00296 0.18 -0.2 296,064 + MPMX19_00296 0.18 +0.5 296,064 + MPMX19_00296 0.18 -0.8 296,064 + MPMX19_00296 0.18 -2.2 296,064 + MPMX19_00296 0.18 -0.5 296,064 + MPMX19_00296 0.18 -1.6 296,064 + MPMX19_00296 0.18 -0.3 296,065 - MPMX19_00296 0.18 -0.1 296,065 - MPMX19_00296 0.18 -2.2 296,065 - MPMX19_00296 0.18 -1.9 296,065 - MPMX19_00296 0.18 -1.7 296,065 - MPMX19_00296 0.18 -0.5 296,065 - MPMX19_00296 0.18 +0.8 296,065 - MPMX19_00296 0.18 -0.8 296,065 - MPMX19_00296 0.18 +0.5 296,065 - MPMX19_00296 0.18 +0.4 296,065 - MPMX19_00296 0.18 -0.2 296,065 - MPMX19_00296 0.18 +0.6 296,065 - MPMX19_00296 0.18 +1.0 296,223 + MPMX19_00296 0.35 +0.1 296,223 + MPMX19_00296 0.35 -2.1 296,223 + MPMX19_00296 0.35 -0.6 296,223 + MPMX19_00296 0.35 -2.0 296,223 + MPMX19_00296 0.35 +0.1 296,224 - MPMX19_00296 0.35 -1.3 296,224 - MPMX19_00296 0.35 +0.7 296,224 - MPMX19_00296 0.35 +0.0 296,224 - MPMX19_00296 0.35 -0.3 296,224 - MPMX19_00296 0.35 -1.0 296,263 + MPMX19_00296 0.39 -0.3 296,263 + MPMX19_00296 0.39 -0.5 296,263 + MPMX19_00296 0.39 -0.3 296,263 + MPMX19_00296 0.39 +1.0 296,263 + MPMX19_00296 0.39 +0.1 296,263 + MPMX19_00296 0.39 +0.4 296,263 + MPMX19_00296 0.39 -0.7 296,264 - MPMX19_00296 0.39 +0.5 296,264 - MPMX19_00296 0.39 -0.5 296,264 - MPMX19_00296 0.39 -0.3 296,264 - MPMX19_00296 0.39 -0.9 296,264 - MPMX19_00296 0.39 +0.8 296,264 - MPMX19_00296 0.39 -0.2 296,264 - MPMX19_00296 0.39 +0.4 296,264 - MPMX19_00296 0.39 +0.1 296,264 - MPMX19_00296 0.39 -0.1 296,264 - MPMX19_00296 0.39 +0.0 296,490 + MPMX19_00296 0.63 +0.5 296,490 + MPMX19_00296 0.63 -0.9 296,490 + MPMX19_00296 0.63 +0.8 296,490 + MPMX19_00296 0.63 -2.0 296,490 + MPMX19_00296 0.63 -0.7 296,490 + MPMX19_00296 0.63 +0.7 296,490 + MPMX19_00296 0.63 +0.7 296,490 + MPMX19_00296 0.63 -1.5 296,490 + MPMX19_00296 0.63 -1.5 296,490 + MPMX19_00296 0.63 -1.6 296,490 + MPMX19_00296 0.63 -0.9 296,490 + MPMX19_00296 0.63 -1.7 296,490 + MPMX19_00296 0.63 +0.4 296,490 + MPMX19_00296 0.63 -0.4 296,490 + MPMX19_00296 0.63 +1.8 296,491 - MPMX19_00296 0.63 -0.2 296,491 - MPMX19_00296 0.63 -0.6 296,491 - MPMX19_00296 0.63 +0.1 296,491 - MPMX19_00296 0.63 -0.3 296,491 - MPMX19_00296 0.63 -1.0 296,491 - MPMX19_00296 0.63 -1.7 296,491 - MPMX19_00296 0.63 -1.0 296,491 - MPMX19_00296 0.63 +0.0 296,491 - MPMX19_00296 0.63 -0.3 296,491 - MPMX19_00296 0.63 +0.1 296,491 - MPMX19_00296 0.63 -0.5 296,491 - MPMX19_00296 0.63 -2.0 296,491 - MPMX19_00296 0.63 -0.5 296,491 - MPMX19_00296 0.63 -0.9 296,733 + MPMX19_00296 0.88 -0.9 296,733 + MPMX19_00296 0.88 -0.9 296,733 + MPMX19_00296 0.88 -0.2 296,733 + MPMX19_00296 0.88 -1.2 296,733 + MPMX19_00296 0.88 -1.0 296,733 + MPMX19_00296 0.88 +1.2 296,733 + MPMX19_00296 0.88 -0.5 296,733 + MPMX19_00296 0.88 -2.0 296,733 + MPMX19_00296 0.88 -1.7 296,733 + MPMX19_00296 0.88 -1.2 296,734 - MPMX19_00296 0.88 -0.4 296,734 - MPMX19_00296 0.88 -1.5 296,734 - MPMX19_00296 0.88 +0.1 296,734 - MPMX19_00296 0.88 -1.0 296,734 - MPMX19_00296 0.88 -1.0 296,734 - MPMX19_00296 0.88 -0.5 296,734 - MPMX19_00296 0.88 -1.0 296,734 - MPMX19_00296 0.88 -0.6 296,734 - MPMX19_00296 0.88 +0.5 296,734 - MPMX19_00296 0.88 -2.0 296,734 - MPMX19_00296 0.88 -0.5 296,734 - MPMX19_00296 0.88 -0.5 296,734 - MPMX19_00296 0.88 -0.7 296,734 - MPMX19_00296 0.88 -0.2 296,734 - MPMX19_00296 0.88 -0.3 296,734 - MPMX19_00296 0.88 -0.4 296,734 - MPMX19_00296 0.88 -0.7 296,754 + -1.2 296,754 + -0.4 296,754 + +0.1 296,754 + -1.0 296,754 + -0.1 296,754 + -0.6 296,754 + -3.6 296,754 + -0.5 296,754 + -0.2 296,754 + +0.9 296,754 + -1.9 296,755 - -2.0 296,755 - -0.7 296,755 - +0.8 296,755 - -0.5 296,755 - +0.2 296,755 - -0.6 296,755 - -0.3 296,755 - -2.5 296,755 - -1.1 296,755 - -2.4 296,755 - -0.2 296,755 - -2.2 296,755 - -0.8 296,755 - -1.0 296,755 - -1.9 296,769 + -0.5 296,769 + -1.0 296,769 + -0.6 296,769 + -1.0 296,770 - -3.5 296,770 - -0.3 296,770 - +1.3 296,770 - -0.4 296,770 - -0.5 296,914 + -2.5 296,914 + -0.1 296,914 + -1.0 296,914 + -0.8 296,914 + -0.1 296,914 + -1.2 296,914 + -0.3 296,915 - -0.6 296,915 - -0.9 296,915 - +0.1 296,971 + MPMX19_00297 0.13 +0.8 296,972 - MPMX19_00297 0.13 -0.6 297,353 + MPMX19_00297 0.70 +1.2 297,354 - MPMX19_00297 0.70 +1.3 297,626 - -0.7 297,760 - +0.5
Or see this region's nucleotide sequence