Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00292 and MPMX19_00293 are separated by 17 nucleotides MPMX19_00293 and MPMX19_00294 are separated by 75 nucleotides MPMX19_00294 and MPMX19_00295 overlap by 4 nucleotides MPMX19_00295 and MPMX19_00296 are separated by 236 nucleotides
MPMX19_00292: MPMX19_00292 - Cytochrome b561, at 292,610 to 293,173
_00292
MPMX19_00293: MPMX19_00293 - hypothetical protein, at 293,191 to 293,412
_00293
MPMX19_00294: MPMX19_00294 - Adaptive-response sensory-kinase SasA, at 293,488 to 294,945
_00294
MPMX19_00295: MPMX19_00295 - Transcriptional regulatory protein QseB, at 294,942 to 295,655
_00295
MPMX19_00296: MPMX19_00296 - (S)-sulfolactate dehydrogenase, at 295,892 to 296,845
_00296
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.528 kb on - strand at 292.528 kb on - strand at 292.528 kb on - strand at 292.531 kb on + strand at 292.531 kb on + strand at 292.532 kb on - strand at 292.532 kb on - strand at 292.532 kb on - strand at 292.543 kb on + strand at 292.544 kb on - strand at 292.545 kb on + strand at 292.545 kb on + strand at 292.545 kb on + strand at 292.546 kb on - strand at 292.546 kb on - strand at 292.684 kb on + strand, within MPMX19_00292 at 292.684 kb on + strand, within MPMX19_00292 at 292.684 kb on + strand, within MPMX19_00292 at 292.685 kb on - strand, within MPMX19_00292 at 292.685 kb on - strand, within MPMX19_00292 at 292.685 kb on - strand, within MPMX19_00292 at 292.759 kb on + strand, within MPMX19_00292 at 292.760 kb on - strand, within MPMX19_00292 at 292.760 kb on - strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 293.029 kb on - strand, within MPMX19_00292 at 293.076 kb on + strand, within MPMX19_00292 at 293.076 kb on + strand, within MPMX19_00292 at 293.077 kb on - strand, within MPMX19_00292 at 293.077 kb on - strand, within MPMX19_00292 at 293.077 kb on - strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.467 kb on + strand at 293.468 kb on - strand at 293.479 kb on - strand at 293.489 kb on + strand at 293.490 kb on - strand at 294.221 kb on + strand, within MPMX19_00294 at 294.222 kb on - strand, within MPMX19_00294 at 294.509 kb on + strand, within MPMX19_00294 at 294.509 kb on + strand, within MPMX19_00294 at 294.510 kb on - strand, within MPMX19_00294 at 294.510 kb on - strand, within MPMX19_00294 at 294.510 kb on - strand, within MPMX19_00294 at 294.548 kb on + strand, within MPMX19_00294 at 294.548 kb on + strand, within MPMX19_00294 at 294.548 kb on + strand, within MPMX19_00294 at 294.548 kb on + strand, within MPMX19_00294 at 294.548 kb on + strand, within MPMX19_00294 at 294.549 kb on - strand, within MPMX19_00294 at 294.549 kb on - strand, within MPMX19_00294 at 294.549 kb on - strand, within MPMX19_00294 at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.836 kb on + strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.837 kb on - strand at 294.873 kb on + strand at 294.874 kb on - strand at 294.874 kb on - strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.003 kb on + strand at 295.004 kb on - strand at 295.004 kb on - strand at 295.004 kb on - strand at 295.004 kb on - strand at 295.004 kb on - strand at 295.004 kb on - strand at 295.120 kb on + strand, within MPMX19_00295 at 295.120 kb on + strand, within MPMX19_00295 at 295.121 kb on - strand, within MPMX19_00295 at 295.121 kb on - strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.363 kb on + strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.364 kb on - strand, within MPMX19_00295 at 295.831 kb on + strand at 295.832 kb on - strand at 295.832 kb on - strand at 295.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 292,527 + +0.3 292,527 + +1.3 292,527 + -0.3 292,527 + -1.0 292,527 + +0.0 292,527 + -1.0 292,527 + +0.7 292,527 + -0.6 292,527 + +0.3 292,527 + +0.4 292,528 - -0.2 292,528 - +0.8 292,528 - -1.2 292,531 + -1.3 292,531 + +0.7 292,532 - -0.1 292,532 - -1.0 292,532 - -0.3 292,543 + -1.3 292,544 - +0.0 292,545 + +0.0 292,545 + +0.8 292,545 + -1.0 292,546 - -0.5 292,546 - -1.0 292,684 + MPMX19_00292 0.13 -0.4 292,684 + MPMX19_00292 0.13 -0.2 292,684 + MPMX19_00292 0.13 -1.2 292,685 - MPMX19_00292 0.13 +0.3 292,685 - MPMX19_00292 0.13 -0.0 292,685 - MPMX19_00292 0.13 -1.0 292,759 + MPMX19_00292 0.26 -2.2 292,760 - MPMX19_00292 0.27 +0.3 292,760 - MPMX19_00292 0.27 -2.1 292,896 + MPMX19_00292 0.51 -1.2 292,896 + MPMX19_00292 0.51 +0.6 292,896 + MPMX19_00292 0.51 +0.2 292,896 + MPMX19_00292 0.51 -0.1 292,896 + MPMX19_00292 0.51 -1.0 292,896 + MPMX19_00292 0.51 -1.5 292,897 - MPMX19_00292 0.51 +0.3 292,897 - MPMX19_00292 0.51 -0.5 292,897 - MPMX19_00292 0.51 -0.0 292,897 - MPMX19_00292 0.51 +0.1 292,897 - MPMX19_00292 0.51 -1.6 293,029 - MPMX19_00292 0.74 -0.9 293,076 + MPMX19_00292 0.83 -0.4 293,076 + MPMX19_00292 0.83 -0.9 293,077 - MPMX19_00292 0.83 -0.5 293,077 - MPMX19_00292 0.83 -2.7 293,077 - MPMX19_00292 0.83 -1.9 293,103 + MPMX19_00292 0.87 -1.9 293,103 + MPMX19_00292 0.87 +2.3 293,103 + MPMX19_00292 0.87 +0.7 293,103 + MPMX19_00292 0.87 +0.1 293,103 + MPMX19_00292 0.87 -0.3 293,103 + MPMX19_00292 0.87 +0.6 293,103 + MPMX19_00292 0.87 -0.4 293,103 + MPMX19_00292 0.87 -0.4 293,103 + MPMX19_00292 0.87 -1.5 293,103 + MPMX19_00292 0.87 -0.2 293,103 + MPMX19_00292 0.87 +0.0 293,104 - MPMX19_00292 0.88 +0.1 293,104 - MPMX19_00292 0.88 -0.9 293,104 - MPMX19_00292 0.88 +0.3 293,104 - MPMX19_00292 0.88 -0.5 293,104 - MPMX19_00292 0.88 +2.4 293,104 - MPMX19_00292 0.88 -1.7 293,104 - MPMX19_00292 0.88 -0.5 293,104 - MPMX19_00292 0.88 +0.5 293,160 + -2.1 293,160 + -0.7 293,160 + -2.0 293,160 + -0.6 293,160 + -1.2 293,160 + -0.7 293,160 + +1.5 293,160 + -0.5 293,160 + -1.0 293,160 + -0.7 293,160 + +1.2 293,160 + -1.1 293,160 + -0.7 293,160 + -1.2 293,160 + -0.5 293,160 + +1.0 293,160 + +0.5 293,160 + -0.9 293,160 + -1.1 293,160 + -0.7 293,160 + +1.0 293,160 + -1.0 293,160 + -0.3 293,160 + -1.2 293,161 - +2.2 293,161 - +0.3 293,161 - -0.0 293,161 - +1.3 293,161 - +2.8 293,161 - +0.4 293,161 - -0.2 293,161 - -1.3 293,161 - +0.3 293,161 - -0.9 293,161 - -0.3 293,161 - -0.3 293,161 - -2.0 293,161 - -2.5 293,161 - -0.5 293,161 - +1.7 293,161 - -1.6 293,161 - -0.4 293,161 - +0.5 293,161 - +0.6 293,467 + -0.3 293,468 - +0.5 293,479 - +1.3 293,489 + +0.1 293,490 - -1.4 294,221 + MPMX19_00294 0.50 -0.2 294,222 - MPMX19_00294 0.50 +1.1 294,509 + MPMX19_00294 0.70 +2.3 294,509 + MPMX19_00294 0.70 -2.5 294,510 - MPMX19_00294 0.70 -0.6 294,510 - MPMX19_00294 0.70 -2.1 294,510 - MPMX19_00294 0.70 +1.1 294,548 + MPMX19_00294 0.73 -0.3 294,548 + MPMX19_00294 0.73 -0.7 294,548 + MPMX19_00294 0.73 +1.2 294,548 + MPMX19_00294 0.73 -2.2 294,548 + MPMX19_00294 0.73 +1.1 294,549 - MPMX19_00294 0.73 -1.0 294,549 - MPMX19_00294 0.73 +0.2 294,549 - MPMX19_00294 0.73 +0.1 294,836 + +0.8 294,836 + -0.3 294,836 + -0.4 294,836 + +0.0 294,836 + -0.0 294,836 + -0.6 294,836 + -0.1 294,836 + +1.7 294,836 + -0.1 294,836 + +0.3 294,836 + +0.8 294,836 + -0.9 294,836 + -1.9 294,836 + -0.3 294,836 + +0.2 294,836 + +0.6 294,836 + +0.5 294,836 + +0.9 294,836 + +1.3 294,836 + +0.4 294,836 + -1.3 294,836 + -0.2 294,836 + -0.7 294,836 + +0.2 294,836 + +0.1 294,836 + -0.5 294,837 - -0.3 294,837 - +0.5 294,837 - -0.1 294,837 - -0.3 294,837 - -0.3 294,837 - -1.9 294,837 - -0.4 294,837 - +0.9 294,837 - -0.6 294,837 - -1.3 294,837 - -0.2 294,837 - -0.6 294,837 - +0.3 294,873 + +1.1 294,874 - -0.1 294,874 - +0.3 295,003 + +0.1 295,003 + +0.4 295,003 + +1.0 295,003 + -1.1 295,003 + +0.4 295,003 + -1.0 295,003 + -0.3 295,003 + -0.2 295,003 + +0.2 295,003 + -1.2 295,003 + +1.8 295,004 - +1.8 295,004 - -0.2 295,004 - +1.1 295,004 - -0.2 295,004 - -0.5 295,004 - -2.1 295,120 + MPMX19_00295 0.25 -1.5 295,120 + MPMX19_00295 0.25 -2.0 295,121 - MPMX19_00295 0.25 +1.1 295,121 - MPMX19_00295 0.25 -0.2 295,363 + MPMX19_00295 0.59 -2.3 295,363 + MPMX19_00295 0.59 -0.3 295,363 + MPMX19_00295 0.59 -0.8 295,363 + MPMX19_00295 0.59 -2.4 295,363 + MPMX19_00295 0.59 -0.3 295,363 + MPMX19_00295 0.59 -0.0 295,363 + MPMX19_00295 0.59 -1.5 295,363 + MPMX19_00295 0.59 -0.2 295,363 + MPMX19_00295 0.59 +0.7 295,363 + MPMX19_00295 0.59 -0.5 295,363 + MPMX19_00295 0.59 +2.1 295,364 - MPMX19_00295 0.59 -0.0 295,364 - MPMX19_00295 0.59 -1.2 295,364 - MPMX19_00295 0.59 +0.0 295,364 - MPMX19_00295 0.59 -0.2 295,364 - MPMX19_00295 0.59 +0.3 295,364 - MPMX19_00295 0.59 -0.1 295,831 + +0.2 295,832 - -0.2 295,832 - +1.5 295,832 - +0.4
Or see this region's nucleotide sequence