Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00265 and MPMX19_00266 are separated by 115 nucleotides MPMX19_00266 and MPMX19_00267 are separated by 51 nucleotides MPMX19_00267 and MPMX19_00268 are separated by 251 nucleotides
MPMX19_00265: MPMX19_00265 - hypothetical protein, at 266,189 to 268,357
_00265
MPMX19_00266: MPMX19_00266 - hypothetical protein, at 268,473 to 268,730
_00266
MPMX19_00267: MPMX19_00267 - hypothetical protein, at 268,782 to 268,967
_00267
MPMX19_00268: MPMX19_00268 - Transcriptional regulatory protein OmpR, at 269,219 to 269,932
_00268
Position (kb) 268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 267.630 kb on + strand, within MPMX19_00265 at 267.630 kb on + strand, within MPMX19_00265 at 267.630 kb on + strand, within MPMX19_00265 at 267.630 kb on + strand, within MPMX19_00265 at 267.630 kb on + strand, within MPMX19_00265 at 267.630 kb on + strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.215 kb on + strand at 268.215 kb on + strand at 268.215 kb on + strand at 268.215 kb on + strand at 268.215 kb on + strand at 268.216 kb on - strand at 268.216 kb on - strand at 268.224 kb on + strand at 268.224 kb on + strand at 268.225 kb on - strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.397 kb on - strand at 268.397 kb on - strand at 268.397 kb on - strand at 268.397 kb on - strand at 268.397 kb on - strand at 268.397 kb on - strand at 268.418 kb on + strand at 268.418 kb on + strand at 268.418 kb on + strand at 268.419 kb on - strand at 268.419 kb on - strand at 268.447 kb on - strand at 268.529 kb on + strand, within MPMX19_00266 at 268.529 kb on + strand, within MPMX19_00266 at 268.529 kb on + strand, within MPMX19_00266 at 268.529 kb on + strand, within MPMX19_00266 at 268.530 kb on - strand, within MPMX19_00266 at 268.530 kb on - strand, within MPMX19_00266 at 268.530 kb on - strand, within MPMX19_00266 at 268.888 kb on + strand, within MPMX19_00267 at 268.888 kb on + strand, within MPMX19_00267 at 268.888 kb on + strand, within MPMX19_00267 at 268.888 kb on + strand, within MPMX19_00267 at 268.888 kb on + strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 269.045 kb on - strand at 269.045 kb on - strand at 269.067 kb on - strand at 269.083 kb on + strand at 269.083 kb on + strand at 269.083 kb on + strand at 269.083 kb on + strand at 269.083 kb on + strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.090 kb on - strand at 269.090 kb on - strand at 269.090 kb on - strand at 269.090 kb on - strand at 269.090 kb on - strand at 269.090 kb on - strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.315 kb on - strand, within MPMX19_00268 at 269.507 kb on + strand, within MPMX19_00268 at 269.507 kb on + strand, within MPMX19_00268 at 269.507 kb on + strand, within MPMX19_00268
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 267,630 + MPMX19_00265 0.66 -0.9 267,630 + MPMX19_00265 0.66 -0.3 267,630 + MPMX19_00265 0.66 -1.2 267,630 + MPMX19_00265 0.66 -1.6 267,630 + MPMX19_00265 0.66 +2.6 267,630 + MPMX19_00265 0.66 -0.3 267,631 - MPMX19_00265 0.66 -0.7 267,631 - MPMX19_00265 0.66 -0.6 267,631 - MPMX19_00265 0.66 +0.5 267,631 - MPMX19_00265 0.66 -0.2 267,631 - MPMX19_00265 0.66 -0.4 267,631 - MPMX19_00265 0.66 -0.5 267,663 + MPMX19_00265 0.68 +0.1 267,663 + MPMX19_00265 0.68 +0.2 267,663 + MPMX19_00265 0.68 -0.4 267,663 + MPMX19_00265 0.68 -2.2 267,663 + MPMX19_00265 0.68 +0.5 267,663 + MPMX19_00265 0.68 -0.1 267,663 + MPMX19_00265 0.68 -0.6 267,663 + MPMX19_00265 0.68 -2.5 267,663 + MPMX19_00265 0.68 -0.7 267,663 + MPMX19_00265 0.68 -0.6 267,663 + MPMX19_00265 0.68 +0.1 267,663 + MPMX19_00265 0.68 -0.1 267,663 + MPMX19_00265 0.68 -3.1 267,663 + MPMX19_00265 0.68 +0.0 267,663 + MPMX19_00265 0.68 -0.3 267,664 - MPMX19_00265 0.68 -2.2 267,664 - MPMX19_00265 0.68 -0.7 267,664 - MPMX19_00265 0.68 +0.7 267,664 - MPMX19_00265 0.68 +0.5 267,664 - MPMX19_00265 0.68 +0.5 267,664 - MPMX19_00265 0.68 -0.8 267,664 - MPMX19_00265 0.68 -0.4 267,664 - MPMX19_00265 0.68 -0.4 267,664 - MPMX19_00265 0.68 -0.5 267,664 - MPMX19_00265 0.68 -0.3 267,664 - MPMX19_00265 0.68 -2.0 267,664 - MPMX19_00265 0.68 +0.4 267,664 - MPMX19_00265 0.68 -0.7 267,664 - MPMX19_00265 0.68 +0.4 267,664 - MPMX19_00265 0.68 -2.5 267,664 - MPMX19_00265 0.68 -2.0 267,664 - MPMX19_00265 0.68 -1.9 267,664 - MPMX19_00265 0.68 +0.3 267,664 - MPMX19_00265 0.68 -0.3 268,128 + MPMX19_00265 0.89 -0.0 268,128 + MPMX19_00265 0.89 +0.7 268,128 + MPMX19_00265 0.89 -1.8 268,128 + MPMX19_00265 0.89 -0.1 268,128 + MPMX19_00265 0.89 -0.8 268,128 + MPMX19_00265 0.89 -1.3 268,128 + MPMX19_00265 0.89 -1.1 268,128 + MPMX19_00265 0.89 +1.1 268,128 + MPMX19_00265 0.89 -0.9 268,128 + MPMX19_00265 0.89 -0.3 268,128 + MPMX19_00265 0.89 +0.3 268,128 + MPMX19_00265 0.89 +0.2 268,128 + MPMX19_00265 0.89 +1.5 268,128 + MPMX19_00265 0.89 -0.3 268,129 - MPMX19_00265 0.89 -0.1 268,129 - MPMX19_00265 0.89 -1.1 268,129 - MPMX19_00265 0.89 -0.9 268,129 - MPMX19_00265 0.89 -1.5 268,129 - MPMX19_00265 0.89 -1.8 268,129 - MPMX19_00265 0.89 -0.0 268,215 + +0.5 268,215 + +0.1 268,215 + -1.3 268,215 + -2.2 268,215 + +0.2 268,216 - -2.0 268,216 - +0.1 268,224 + +0.4 268,224 + +1.1 268,225 - -0.4 268,396 + -0.5 268,396 + -1.6 268,396 + -0.5 268,396 + -0.1 268,396 + +0.6 268,396 + -1.1 268,396 + +0.4 268,396 + +1.0 268,396 + +0.4 268,396 + -0.5 268,396 + -0.5 268,396 + +0.4 268,397 - +0.6 268,397 - -0.1 268,397 - +0.4 268,397 - -0.9 268,397 - -0.1 268,397 - -0.6 268,418 + +0.9 268,418 + -0.0 268,418 + +0.3 268,419 - -0.3 268,419 - -0.0 268,447 - -0.8 268,529 + MPMX19_00266 0.22 -1.1 268,529 + MPMX19_00266 0.22 -1.8 268,529 + MPMX19_00266 0.22 +0.9 268,529 + MPMX19_00266 0.22 -1.4 268,530 - MPMX19_00266 0.22 -1.1 268,530 - MPMX19_00266 0.22 -1.3 268,530 - MPMX19_00266 0.22 +0.7 268,888 + MPMX19_00267 0.57 +0.7 268,888 + MPMX19_00267 0.57 +0.5 268,888 + MPMX19_00267 0.57 +0.3 268,888 + MPMX19_00267 0.57 -0.3 268,888 + MPMX19_00267 0.57 -0.5 268,889 - MPMX19_00267 0.58 +0.3 268,889 - MPMX19_00267 0.58 -0.6 268,889 - MPMX19_00267 0.58 -0.5 268,889 - MPMX19_00267 0.58 -0.0 268,889 - MPMX19_00267 0.58 +1.1 268,889 - MPMX19_00267 0.58 -0.2 269,045 - +0.1 269,045 - -1.6 269,067 - -1.3 269,083 + +0.9 269,083 + -1.8 269,083 + -0.0 269,083 + +0.1 269,083 + -1.0 269,084 - +1.4 269,084 - +0.1 269,084 - -0.2 269,084 - -0.0 269,084 - +1.1 269,084 - +0.9 269,084 - -0.6 269,084 - +1.1 269,084 - -0.5 269,089 + -0.0 269,089 + -0.3 269,089 + -0.9 269,089 + -1.2 269,089 + -0.3 269,089 + -0.5 269,089 + +1.3 269,089 + +0.2 269,089 + -2.0 269,089 + -0.3 269,090 - -0.7 269,090 - +0.9 269,090 - -1.3 269,090 - +0.1 269,090 - -1.2 269,090 - +0.1 269,163 + +1.1 269,163 + -0.6 269,163 + +1.2 269,163 + +0.1 269,163 + -0.3 269,163 + +0.3 269,163 + -0.7 269,163 + +0.4 269,164 - -0.2 269,164 - +1.2 269,164 - +0.7 269,164 - -0.7 269,164 - -0.6 269,164 - -0.5 269,164 - +0.3 269,193 + -0.3 269,193 + -0.6 269,193 + -0.5 269,193 + -0.5 269,193 + -1.5 269,193 + +1.6 269,193 + -2.1 269,193 + -1.3 269,193 + -0.6 269,193 + -1.2 269,193 + -0.8 269,193 + +0.1 269,193 + -1.0 269,194 - -0.7 269,194 - +0.9 269,194 - +0.2 269,194 - +0.6 269,194 - +0.9 269,194 - -1.6 269,194 - +0.7 269,194 - -1.5 269,194 - +0.3 269,194 - +1.3 269,194 - -0.7 269,194 - -1.8 269,194 - +0.4 269,194 - +0.5 269,194 - -0.1 269,194 - -0.5 269,194 - +2.6 269,194 - -1.4 269,194 - -2.4 269,194 - -0.3 269,194 - -0.0 269,211 + -0.4 269,211 + +0.7 269,211 + +0.3 269,211 + +0.3 269,211 + -0.7 269,211 + +0.1 269,211 + -0.6 269,211 + -1.7 269,211 + +0.6 269,212 - -0.8 269,212 - +1.0 269,212 - +0.3 269,212 - -1.2 269,212 - +1.4 269,212 - +0.6 269,212 - +0.5 269,212 - +1.3 269,224 + -0.3 269,224 + +0.3 269,224 + -0.6 269,224 + +0.4 269,224 + -0.8 269,224 + -0.9 269,224 + +0.3 269,224 + +0.2 269,224 + -0.1 269,224 + +0.6 269,224 + -0.0 269,224 + -0.1 269,224 + -0.5 269,224 + -0.5 269,224 + +0.3 269,224 + +0.6 269,224 + -0.3 269,224 + -0.2 269,225 - -1.1 269,225 - -0.7 269,225 - -1.2 269,225 - +0.1 269,225 - +1.6 269,225 - -0.5 269,225 - +1.3 269,225 - -1.3 269,225 - -0.8 269,225 - -0.3 269,225 - -0.3 269,225 - +0.7 269,273 + -1.7 269,273 + +0.1 269,273 + +0.5 269,273 + -1.1 269,273 + -0.6 269,273 + -0.7 269,273 + +1.3 269,273 + -1.4 269,273 + +1.0 269,273 + -0.7 269,273 + -0.9 269,273 + -0.3 269,273 + +0.6 269,273 + +1.3 269,273 + -0.8 269,273 + +1.4 269,273 + -0.8 269,273 + +1.5 269,273 + -0.1 269,273 + +0.2 269,273 + +0.2 269,274 - +0.3 269,274 - -0.2 269,274 - +0.1 269,274 - -0.5 269,274 - -0.1 269,274 - +0.1 269,274 - -1.4 269,274 - -0.6 269,274 - -1.5 269,274 - -0.2 269,274 - -1.0 269,274 - +0.3 269,274 - +0.4 269,274 - +0.3 269,274 - -0.1 269,274 - +0.4 269,274 - +0.5 269,274 - +1.2 269,274 - +0.3 269,274 - -0.5 269,274 - -1.2 269,274 - +1.0 269,274 - +1.2 269,274 - +2.9 269,274 - +1.6 269,274 - -0.9 269,274 - +0.4 269,274 - -0.5 269,315 - MPMX19_00268 0.13 -1.1 269,507 + MPMX19_00268 0.40 +0.1 269,507 + MPMX19_00268 0.40 -0.1 269,507 + MPMX19_00268 0.40 -0.1
Or see this region's nucleotide sequence