Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00259 and MPMX19_00260 are separated by 346 nucleotides MPMX19_00260 and MPMX19_00261 overlap by 4 nucleotides MPMX19_00261 and MPMX19_00262 are separated by 120 nucleotides
MPMX19_00259: MPMX19_00259 - hypothetical protein, at 260,314 to 262,377
_00259
MPMX19_00260: MPMX19_00260 - Hydrogen cyanide synthase subunit HcnC, at 262,724 to 263,905
_00260
MPMX19_00261: MPMX19_00261 - hypothetical protein, at 263,902 to 264,123
_00261
MPMX19_00262: MPMX19_00262 - Thiazole synthase, at 264,244 to 265,041
_00262
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.770 kb on + strand, within MPMX19_00259 at 261.770 kb on + strand, within MPMX19_00259 at 261.770 kb on + strand, within MPMX19_00259 at 261.770 kb on + strand, within MPMX19_00259 at 261.771 kb on - strand, within MPMX19_00259 at 261.771 kb on - strand, within MPMX19_00259 at 261.771 kb on - strand, within MPMX19_00259 at 261.771 kb on - strand, within MPMX19_00259 at 262.040 kb on + strand, within MPMX19_00259 at 262.040 kb on + strand, within MPMX19_00259 at 262.040 kb on + strand, within MPMX19_00259 at 262.041 kb on - strand, within MPMX19_00259 at 262.454 kb on + strand at 262.455 kb on - strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.517 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.626 kb on - strand at 262.626 kb on - strand at 262.626 kb on - strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.638 kb on - strand at 262.638 kb on - strand at 262.638 kb on - strand at 262.638 kb on - strand at 262.638 kb on - strand at 262.638 kb on - strand at 262.699 kb on + strand at 262.699 kb on + strand at 262.751 kb on + strand at 262.751 kb on + strand at 262.752 kb on - strand at 262.752 kb on - strand at 262.752 kb on - strand at 262.752 kb on - strand at 262.752 kb on - strand at 263.445 kb on + strand, within MPMX19_00260 at 263.446 kb on - strand, within MPMX19_00260 at 263.531 kb on + strand, within MPMX19_00260 at 263.531 kb on + strand, within MPMX19_00260 at 263.531 kb on + strand, within MPMX19_00260 at 263.531 kb on + strand, within MPMX19_00260 at 263.532 kb on - strand, within MPMX19_00260 at 263.532 kb on - strand, within MPMX19_00260 at 264.661 kb on + strand, within MPMX19_00262 at 264.661 kb on + strand, within MPMX19_00262 at 264.661 kb on + strand, within MPMX19_00262 at 264.662 kb on - strand, within MPMX19_00262 at 264.662 kb on - strand, within MPMX19_00262
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 261,770 + MPMX19_00259 0.71 -1.6 261,770 + MPMX19_00259 0.71 -0.1 261,770 + MPMX19_00259 0.71 -0.8 261,770 + MPMX19_00259 0.71 +0.4 261,771 - MPMX19_00259 0.71 -1.1 261,771 - MPMX19_00259 0.71 -1.8 261,771 - MPMX19_00259 0.71 +0.0 261,771 - MPMX19_00259 0.71 +0.6 262,040 + MPMX19_00259 0.84 -0.1 262,040 + MPMX19_00259 0.84 -0.7 262,040 + MPMX19_00259 0.84 +1.4 262,041 - MPMX19_00259 0.84 -1.5 262,454 + -0.4 262,455 - -0.4 262,477 + -0.7 262,477 + -0.1 262,477 + +0.4 262,477 + +0.1 262,477 + -0.1 262,477 + +0.3 262,477 + -0.4 262,477 + -0.7 262,477 + -0.7 262,477 + -0.6 262,478 - -1.1 262,478 - +0.2 262,478 - -1.7 262,478 - -0.5 262,478 - -1.3 262,478 - -1.5 262,478 - -0.3 262,478 - -0.1 262,517 + -0.1 262,625 + +0.9 262,625 + -0.1 262,625 + +0.3 262,625 + -2.2 262,625 + -1.5 262,625 + +0.7 262,625 + -0.9 262,626 - +0.1 262,626 - -0.9 262,626 - -0.5 262,637 + +0.1 262,637 + -0.7 262,637 + -0.9 262,637 + +0.3 262,637 + -1.7 262,637 + -1.1 262,637 + +0.3 262,638 - +1.9 262,638 - -0.5 262,638 - +0.5 262,638 - -0.9 262,638 - +0.5 262,638 - -1.3 262,699 + -1.2 262,699 + -0.0 262,751 + -1.4 262,751 + +0.9 262,752 - +0.1 262,752 - +0.1 262,752 - -1.9 262,752 - +0.5 262,752 - +0.9 263,445 + MPMX19_00260 0.61 -2.5 263,446 - MPMX19_00260 0.61 -0.5 263,531 + MPMX19_00260 0.68 -1.1 263,531 + MPMX19_00260 0.68 -1.3 263,531 + MPMX19_00260 0.68 +0.9 263,531 + MPMX19_00260 0.68 -0.6 263,532 - MPMX19_00260 0.68 +0.7 263,532 - MPMX19_00260 0.68 +1.4 264,661 + MPMX19_00262 0.52 +1.3 264,661 + MPMX19_00262 0.52 -1.5 264,661 + MPMX19_00262 0.52 -0.5 264,662 - MPMX19_00262 0.52 -0.5 264,662 - MPMX19_00262 0.52 +0.1
Or see this region's nucleotide sequence