Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00238 and MPMX19_00239 are separated by 85 nucleotides MPMX19_00239 and MPMX19_00240 are separated by 33 nucleotides MPMX19_00240 and MPMX19_00241 are separated by 16 nucleotides MPMX19_00241 and MPMX19_00242 are separated by 98 nucleotides MPMX19_00242 and MPMX19_00243 overlap by 4 nucleotides
MPMX19_00238: MPMX19_00238 - hypothetical protein, at 241,469 to 242,260
_00238
MPMX19_00239: MPMX19_00239 - putative adenylyltransferase/sulfurtransferase MoeZ, at 242,346 to 243,146
_00239
MPMX19_00240: MPMX19_00240 - hypothetical protein, at 243,180 to 243,680
_00240
MPMX19_00241: MPMX19_00241 - hypothetical protein, at 243,697 to 243,954
_00241
MPMX19_00242: MPMX19_00242 - hypothetical protein, at 244,053 to 244,505
_00242
MPMX19_00243: MPMX19_00243 - ECF RNA polymerase sigma factor SigJ, at 244,502 to 245,407
_00243
Position (kb) 243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 242.345 kb on + strand at 242.345 kb on + strand at 242.345 kb on + strand at 242.345 kb on + strand at 242.345 kb on + strand at 242.345 kb on + strand at 242.345 kb on + strand at 242.345 kb on + strand at 242.345 kb on + strand at 242.345 kb on + strand at 242.346 kb on - strand at 242.346 kb on - strand at 242.346 kb on - strand at 242.388 kb on + strand at 242.388 kb on + strand at 242.389 kb on - strand at 242.389 kb on - strand at 242.389 kb on - strand at 242.389 kb on - strand at 242.499 kb on + strand, within MPMX19_00239 at 242.499 kb on + strand, within MPMX19_00239 at 242.499 kb on + strand, within MPMX19_00239 at 242.499 kb on + strand, within MPMX19_00239 at 242.499 kb on + strand, within MPMX19_00239 at 242.499 kb on + strand, within MPMX19_00239 at 242.499 kb on + strand, within MPMX19_00239 at 242.499 kb on + strand, within MPMX19_00239 at 242.500 kb on - strand, within MPMX19_00239 at 242.500 kb on - strand, within MPMX19_00239 at 242.500 kb on - strand, within MPMX19_00239 at 242.500 kb on - strand, within MPMX19_00239 at 242.500 kb on - strand, within MPMX19_00239 at 242.500 kb on - strand, within MPMX19_00239 at 242.500 kb on - strand, within MPMX19_00239 at 242.500 kb on - strand, within MPMX19_00239 at 242.877 kb on + strand, within MPMX19_00239 at 242.877 kb on + strand, within MPMX19_00239 at 242.877 kb on + strand, within MPMX19_00239 at 242.878 kb on - strand, within MPMX19_00239 at 243.054 kb on + strand, within MPMX19_00239 at 243.054 kb on + strand, within MPMX19_00239 at 243.054 kb on + strand, within MPMX19_00239 at 243.054 kb on + strand, within MPMX19_00239 at 243.054 kb on + strand, within MPMX19_00239 at 243.054 kb on + strand, within MPMX19_00239 at 243.054 kb on + strand, within MPMX19_00239 at 243.054 kb on + strand, within MPMX19_00239 at 243.054 kb on + strand, within MPMX19_00239 at 243.054 kb on + strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.055 kb on - strand, within MPMX19_00239 at 243.063 kb on + strand, within MPMX19_00239 at 243.063 kb on + strand, within MPMX19_00239 at 243.063 kb on + strand, within MPMX19_00239 at 243.064 kb on - strand, within MPMX19_00239 at 243.064 kb on - strand, within MPMX19_00239 at 243.064 kb on - strand, within MPMX19_00239 at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.163 kb on + strand at 243.164 kb on - strand at 243.164 kb on - strand at 243.164 kb on - strand at 243.164 kb on - strand at 243.164 kb on - strand at 243.164 kb on - strand at 243.164 kb on - strand at 243.164 kb on - strand at 243.164 kb on - strand at 243.164 kb on - strand at 243.291 kb on + strand, within MPMX19_00240 at 243.291 kb on + strand, within MPMX19_00240 at 243.291 kb on + strand, within MPMX19_00240 at 243.292 kb on - strand, within MPMX19_00240 at 243.292 kb on - strand, within MPMX19_00240 at 243.459 kb on + strand, within MPMX19_00240 at 243.459 kb on + strand, within MPMX19_00240 at 243.460 kb on - strand, within MPMX19_00240 at 243.776 kb on - strand, within MPMX19_00241 at 244.095 kb on + strand at 244.095 kb on + strand at 244.095 kb on + strand at 244.095 kb on + strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.473 kb on - strand at 244.473 kb on - strand at 244.679 kb on + strand, within MPMX19_00243 at 244.679 kb on + strand, within MPMX19_00243 at 244.679 kb on + strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 242,345 + -1.6 242,345 + -0.3 242,345 + -0.0 242,345 + +0.7 242,345 + -0.8 242,345 + -0.0 242,345 + -0.6 242,345 + -0.7 242,345 + -1.8 242,345 + -0.5 242,346 - -0.8 242,346 - -1.7 242,346 - +0.0 242,388 + +0.5 242,388 + +1.2 242,389 - -1.0 242,389 - +0.9 242,389 - -0.6 242,389 - -1.1 242,499 + MPMX19_00239 0.19 -0.2 242,499 + MPMX19_00239 0.19 +1.4 242,499 + MPMX19_00239 0.19 +0.3 242,499 + MPMX19_00239 0.19 -0.7 242,499 + MPMX19_00239 0.19 +0.0 242,499 + MPMX19_00239 0.19 -0.3 242,499 + MPMX19_00239 0.19 -0.6 242,499 + MPMX19_00239 0.19 -0.5 242,500 - MPMX19_00239 0.19 +1.5 242,500 - MPMX19_00239 0.19 -1.1 242,500 - MPMX19_00239 0.19 -0.6 242,500 - MPMX19_00239 0.19 +1.3 242,500 - MPMX19_00239 0.19 +0.8 242,500 - MPMX19_00239 0.19 -1.5 242,500 - MPMX19_00239 0.19 -2.4 242,500 - MPMX19_00239 0.19 -0.9 242,877 + MPMX19_00239 0.66 +1.4 242,877 + MPMX19_00239 0.66 +0.1 242,877 + MPMX19_00239 0.66 -0.7 242,878 - MPMX19_00239 0.66 +0.1 243,054 + MPMX19_00239 0.88 -1.1 243,054 + MPMX19_00239 0.88 -0.1 243,054 + MPMX19_00239 0.88 -0.9 243,054 + MPMX19_00239 0.88 -1.1 243,054 + MPMX19_00239 0.88 -0.6 243,054 + MPMX19_00239 0.88 -0.7 243,054 + MPMX19_00239 0.88 -0.6 243,054 + MPMX19_00239 0.88 -0.3 243,054 + MPMX19_00239 0.88 -1.0 243,054 + MPMX19_00239 0.88 -1.0 243,055 - MPMX19_00239 0.89 +0.1 243,055 - MPMX19_00239 0.89 -0.1 243,055 - MPMX19_00239 0.89 +0.1 243,055 - MPMX19_00239 0.89 +0.2 243,055 - MPMX19_00239 0.89 +0.6 243,055 - MPMX19_00239 0.89 -0.7 243,055 - MPMX19_00239 0.89 -0.2 243,055 - MPMX19_00239 0.89 -1.4 243,055 - MPMX19_00239 0.89 -1.0 243,055 - MPMX19_00239 0.89 +0.3 243,055 - MPMX19_00239 0.89 -1.1 243,055 - MPMX19_00239 0.89 +0.3 243,063 + MPMX19_00239 0.90 -0.1 243,063 + MPMX19_00239 0.90 -1.3 243,063 + MPMX19_00239 0.90 -0.5 243,064 - MPMX19_00239 0.90 -1.0 243,064 - MPMX19_00239 0.90 -3.0 243,064 - MPMX19_00239 0.90 -0.6 243,163 + +0.6 243,163 + -0.7 243,163 + -0.3 243,163 + +0.4 243,163 + +1.4 243,163 + -1.1 243,163 + -0.7 243,163 + +1.1 243,163 + -0.9 243,163 + -0.5 243,163 + -0.3 243,163 + +0.4 243,163 + -0.4 243,164 - -0.0 243,164 - +0.3 243,164 - -2.0 243,164 - +0.5 243,164 - -0.4 243,164 - -0.8 243,164 - -0.7 243,164 - +1.4 243,164 - +0.9 243,164 - -1.6 243,291 + MPMX19_00240 0.22 -0.7 243,291 + MPMX19_00240 0.22 -0.6 243,291 + MPMX19_00240 0.22 -1.2 243,292 - MPMX19_00240 0.22 +0.6 243,292 - MPMX19_00240 0.22 +1.0 243,459 + MPMX19_00240 0.56 +1.7 243,459 + MPMX19_00240 0.56 +0.9 243,460 - MPMX19_00240 0.56 -0.1 243,776 - MPMX19_00241 0.31 -0.0 244,095 + +0.1 244,095 + -1.5 244,095 + -0.0 244,095 + +1.3 244,096 - -1.0 244,096 - +0.9 244,096 - -1.4 244,096 - -1.5 244,096 - -0.8 244,096 - -0.0 244,096 - -2.3 244,096 - -1.1 244,200 + MPMX19_00242 0.32 -0.0 244,200 + MPMX19_00242 0.32 -0.5 244,200 + MPMX19_00242 0.32 +0.3 244,200 + MPMX19_00242 0.32 +0.5 244,200 + MPMX19_00242 0.32 -0.3 244,200 + MPMX19_00242 0.32 -0.2 244,200 + MPMX19_00242 0.32 -0.2 244,200 + MPMX19_00242 0.32 +0.1 244,200 + MPMX19_00242 0.32 -0.1 244,200 + MPMX19_00242 0.32 -1.2 244,200 + MPMX19_00242 0.32 -0.6 244,200 + MPMX19_00242 0.32 -1.7 244,200 + MPMX19_00242 0.32 -2.3 244,200 + MPMX19_00242 0.32 +0.1 244,200 + MPMX19_00242 0.32 -1.1 244,200 + MPMX19_00242 0.32 +0.3 244,200 + MPMX19_00242 0.32 -0.5 244,200 + MPMX19_00242 0.32 -1.1 244,200 + MPMX19_00242 0.32 -0.0 244,200 + MPMX19_00242 0.32 -1.3 244,200 + MPMX19_00242 0.32 -0.1 244,200 + MPMX19_00242 0.32 +0.3 244,200 + MPMX19_00242 0.32 -1.3 244,200 + MPMX19_00242 0.32 -0.4 244,200 + MPMX19_00242 0.32 -1.6 244,201 - MPMX19_00242 0.33 +0.6 244,201 - MPMX19_00242 0.33 -1.2 244,201 - MPMX19_00242 0.33 -0.8 244,201 - MPMX19_00242 0.33 +0.5 244,201 - MPMX19_00242 0.33 -1.6 244,201 - MPMX19_00242 0.33 -0.2 244,201 - MPMX19_00242 0.33 -2.8 244,201 - MPMX19_00242 0.33 -0.8 244,201 - MPMX19_00242 0.33 +0.4 244,201 - MPMX19_00242 0.33 +2.5 244,201 - MPMX19_00242 0.33 -0.7 244,201 - MPMX19_00242 0.33 -1.0 244,201 - MPMX19_00242 0.33 -1.1 244,201 - MPMX19_00242 0.33 +0.3 244,201 - MPMX19_00242 0.33 -0.3 244,201 - MPMX19_00242 0.33 -1.0 244,201 - MPMX19_00242 0.33 +0.4 244,201 - MPMX19_00242 0.33 -0.2 244,201 - MPMX19_00242 0.33 -2.0 244,201 - MPMX19_00242 0.33 -1.0 244,472 + +0.5 244,472 + -2.0 244,472 + -0.5 244,472 + +0.1 244,472 + +0.3 244,472 + -0.0 244,472 + +0.4 244,473 - -1.6 244,473 - +0.3 244,679 + MPMX19_00243 0.20 -0.5 244,679 + MPMX19_00243 0.20 -0.0 244,679 + MPMX19_00243 0.20 -1.9 244,680 - MPMX19_00243 0.20 -1.3 244,680 - MPMX19_00243 0.20 -0.3 244,680 - MPMX19_00243 0.20 +0.3 244,680 - MPMX19_00243 0.20 -0.0 244,680 - MPMX19_00243 0.20 -1.9
Or see this region's nucleotide sequence