Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00224 and MPMX19_00225 are separated by 200 nucleotides MPMX19_00225 and MPMX19_00226 are separated by 7 nucleotides
MPMX19_00224: MPMX19_00224 - HTH-type transcriptional regulator GltC, at 226,027 to 226,920
_00224
MPMX19_00225: MPMX19_00225 - hypothetical protein, at 227,121 to 227,657
_00225
MPMX19_00226: MPMX19_00226 - hypothetical protein, at 227,665 to 229,218
_00226
Position (kb)
227
228 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 226.286 kb on + strand, within MPMX19_00224 at 226.286 kb on + strand, within MPMX19_00224 at 226.286 kb on + strand, within MPMX19_00224 at 226.286 kb on + strand, within MPMX19_00224 at 226.287 kb on - strand, within MPMX19_00224 at 226.287 kb on - strand, within MPMX19_00224 at 226.287 kb on - strand, within MPMX19_00224 at 226.287 kb on - strand, within MPMX19_00224 at 226.287 kb on - strand, within MPMX19_00224 at 226.287 kb on - strand, within MPMX19_00224 at 226.287 kb on - strand, within MPMX19_00224 at 226.287 kb on - strand, within MPMX19_00224 at 226.287 kb on - strand, within MPMX19_00224 at 226.287 kb on - strand, within MPMX19_00224 at 226.613 kb on + strand, within MPMX19_00224 at 226.613 kb on + strand, within MPMX19_00224 at 226.613 kb on + strand, within MPMX19_00224 at 226.613 kb on + strand, within MPMX19_00224 at 226.613 kb on + strand, within MPMX19_00224 at 226.613 kb on + strand, within MPMX19_00224 at 226.614 kb on - strand, within MPMX19_00224 at 226.614 kb on - strand, within MPMX19_00224 at 226.614 kb on - strand, within MPMX19_00224 at 226.614 kb on - strand, within MPMX19_00224 at 226.614 kb on - strand, within MPMX19_00224 at 226.614 kb on - strand, within MPMX19_00224 at 226.614 kb on - strand, within MPMX19_00224 at 226.614 kb on - strand, within MPMX19_00224 at 226.706 kb on + strand, within MPMX19_00224 at 226.706 kb on + strand, within MPMX19_00224 at 226.706 kb on + strand, within MPMX19_00224 at 226.707 kb on - strand, within MPMX19_00224 at 226.707 kb on - strand, within MPMX19_00224 at 226.707 kb on - strand, within MPMX19_00224 at 226.927 kb on + strand at 226.927 kb on + strand at 226.927 kb on + strand at 226.928 kb on - strand at 226.961 kb on - strand at 227.013 kb on + strand at 227.013 kb on + strand at 227.013 kb on + strand at 227.013 kb on + strand at 227.014 kb on - strand at 227.014 kb on - strand at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.353 kb on - strand, within MPMX19_00225 at 227.353 kb on - strand, within MPMX19_00225 at 227.353 kb on - strand, within MPMX19_00225 at 227.353 kb on - strand, within MPMX19_00225 at 227.353 kb on - strand, within MPMX19_00225 at 227.487 kb on + strand, within MPMX19_00225 at 227.487 kb on + strand, within MPMX19_00225 at 227.488 kb on - strand, within MPMX19_00225 at 227.526 kb on + strand, within MPMX19_00225 at 227.526 kb on + strand, within MPMX19_00225 at 227.526 kb on + strand, within MPMX19_00225 at 227.527 kb on - strand, within MPMX19_00225 at 227.527 kb on - strand, within MPMX19_00225 at 227.553 kb on + strand, within MPMX19_00225 at 227.553 kb on + strand, within MPMX19_00225 at 227.553 kb on + strand, within MPMX19_00225 at 227.553 kb on + strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 228.110 kb on + strand, within MPMX19_00226 at 228.111 kb on - strand, within MPMX19_00226 at 228.111 kb on - strand, within MPMX19_00226 at 228.111 kb on - strand, within MPMX19_00226 at 228.176 kb on + strand, within MPMX19_00226 at 228.177 kb on - strand, within MPMX19_00226 at 228.347 kb on + strand, within MPMX19_00226 at 228.348 kb on - strand, within MPMX19_00226 at 228.348 kb on - strand, within MPMX19_00226 at 228.348 kb on - strand, within MPMX19_00226
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 226,286 + MPMX19_00224 0.29 -0.7 226,286 + MPMX19_00224 0.29 -1.2 226,286 + MPMX19_00224 0.29 -0.8 226,286 + MPMX19_00224 0.29 +1.3 226,287 - MPMX19_00224 0.29 -0.3 226,287 - MPMX19_00224 0.29 +1.4 226,287 - MPMX19_00224 0.29 -1.3 226,287 - MPMX19_00224 0.29 -0.7 226,287 - MPMX19_00224 0.29 -1.4 226,287 - MPMX19_00224 0.29 +0.1 226,287 - MPMX19_00224 0.29 -2.1 226,287 - MPMX19_00224 0.29 -0.5 226,287 - MPMX19_00224 0.29 -1.4 226,287 - MPMX19_00224 0.29 -0.7 226,613 + MPMX19_00224 0.66 +0.2 226,613 + MPMX19_00224 0.66 -0.8 226,613 + MPMX19_00224 0.66 -0.9 226,613 + MPMX19_00224 0.66 -0.1 226,613 + MPMX19_00224 0.66 +0.1 226,613 + MPMX19_00224 0.66 -0.7 226,614 - MPMX19_00224 0.66 -0.1 226,614 - MPMX19_00224 0.66 -1.6 226,614 - MPMX19_00224 0.66 -1.3 226,614 - MPMX19_00224 0.66 +1.4 226,614 - MPMX19_00224 0.66 +0.6 226,614 - MPMX19_00224 0.66 -0.5 226,614 - MPMX19_00224 0.66 +0.1 226,614 - MPMX19_00224 0.66 -0.3 226,706 + MPMX19_00224 0.76 -1.1 226,706 + MPMX19_00224 0.76 -0.5 226,706 + MPMX19_00224 0.76 -0.1 226,707 - MPMX19_00224 0.76 +1.4 226,707 - MPMX19_00224 0.76 -0.0 226,707 - MPMX19_00224 0.76 +0.9 226,927 + -1.1 226,927 + -1.3 226,927 + -1.0 226,928 - +0.4 226,961 - +0.3 227,013 + -0.1 227,013 + -0.5 227,013 + -0.9 227,013 + -1.1 227,014 - -1.2 227,014 - -1.4 227,352 + MPMX19_00225 0.43 +0.4 227,352 + MPMX19_00225 0.43 -1.5 227,352 + MPMX19_00225 0.43 +0.3 227,352 + MPMX19_00225 0.43 +0.5 227,352 + MPMX19_00225 0.43 +1.1 227,352 + MPMX19_00225 0.43 +0.9 227,352 + MPMX19_00225 0.43 +0.5 227,352 + MPMX19_00225 0.43 +0.4 227,353 - MPMX19_00225 0.43 -0.0 227,353 - MPMX19_00225 0.43 -0.8 227,353 - MPMX19_00225 0.43 -0.3 227,353 - MPMX19_00225 0.43 -0.9 227,353 - MPMX19_00225 0.43 +1.0 227,487 + MPMX19_00225 0.68 +0.1 227,487 + MPMX19_00225 0.68 -0.9 227,488 - MPMX19_00225 0.68 -0.1 227,526 + MPMX19_00225 0.75 +1.3 227,526 + MPMX19_00225 0.75 +0.1 227,526 + MPMX19_00225 0.75 -0.5 227,527 - MPMX19_00225 0.76 +2.1 227,527 - MPMX19_00225 0.76 -0.1 227,553 + MPMX19_00225 0.80 +1.9 227,553 + MPMX19_00225 0.80 +1.2 227,553 + MPMX19_00225 0.80 -0.4 227,553 + MPMX19_00225 0.80 -1.8 227,554 - MPMX19_00225 0.81 +1.1 227,554 - MPMX19_00225 0.81 -0.0 227,554 - MPMX19_00225 0.81 -0.7 227,554 - MPMX19_00225 0.81 -1.0 227,554 - MPMX19_00225 0.81 -0.7 227,554 - MPMX19_00225 0.81 -1.2 227,554 - MPMX19_00225 0.81 +0.1 227,554 - MPMX19_00225 0.81 -0.5 227,554 - MPMX19_00225 0.81 +0.7 227,822 + MPMX19_00226 0.10 -2.3 227,822 + MPMX19_00226 0.10 -0.8 227,822 + MPMX19_00226 0.10 -0.1 227,822 + MPMX19_00226 0.10 +0.9 227,822 + MPMX19_00226 0.10 -0.5 227,822 + MPMX19_00226 0.10 +0.9 227,822 + MPMX19_00226 0.10 +1.1 227,822 + MPMX19_00226 0.10 +0.3 227,822 + MPMX19_00226 0.10 -0.9 227,822 + MPMX19_00226 0.10 +0.3 227,822 + MPMX19_00226 0.10 +0.1 227,822 + MPMX19_00226 0.10 -1.8 227,822 + MPMX19_00226 0.10 +0.4 227,822 + MPMX19_00226 0.10 +0.0 227,822 + MPMX19_00226 0.10 +0.5 227,822 + MPMX19_00226 0.10 -0.0 227,822 + MPMX19_00226 0.10 -0.1 227,822 + MPMX19_00226 0.10 -0.1 227,822 + MPMX19_00226 0.10 -0.4 227,822 + MPMX19_00226 0.10 +0.6 227,822 + MPMX19_00226 0.10 +0.9 227,822 + MPMX19_00226 0.10 +0.4 227,822 + MPMX19_00226 0.10 -0.8 227,823 - MPMX19_00226 0.10 -0.8 227,823 - MPMX19_00226 0.10 +0.4 227,823 - MPMX19_00226 0.10 -1.6 227,823 - MPMX19_00226 0.10 -1.8 227,823 - MPMX19_00226 0.10 -0.9 227,823 - MPMX19_00226 0.10 +0.5 227,823 - MPMX19_00226 0.10 -0.9 227,823 - MPMX19_00226 0.10 -1.7 227,823 - MPMX19_00226 0.10 +0.1 227,823 - MPMX19_00226 0.10 -1.3 227,823 - MPMX19_00226 0.10 -0.6 227,823 - MPMX19_00226 0.10 +0.9 227,823 - MPMX19_00226 0.10 +1.3 227,823 - MPMX19_00226 0.10 +0.8 227,823 - MPMX19_00226 0.10 +0.4 227,823 - MPMX19_00226 0.10 -0.3 227,823 - MPMX19_00226 0.10 +0.8 228,110 + MPMX19_00226 0.29 -0.8 228,111 - MPMX19_00226 0.29 -1.6 228,111 - MPMX19_00226 0.29 -0.7 228,111 - MPMX19_00226 0.29 +0.1 228,176 + MPMX19_00226 0.33 +0.1 228,177 - MPMX19_00226 0.33 +0.7 228,347 + MPMX19_00226 0.44 -1.1 228,348 - MPMX19_00226 0.44 +1.5 228,348 - MPMX19_00226 0.44 +0.8 228,348 - MPMX19_00226 0.44 +0.1
Or see this region's nucleotide sequence