Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00179 and MPMX19_00180 are separated by 55 nucleotides MPMX19_00180 and MPMX19_00181 are separated by 2 nucleotides MPMX19_00181 and MPMX19_00182 are separated by 74 nucleotides MPMX19_00182 and MPMX19_00183 overlap by 1 nucleotides MPMX19_00183 and MPMX19_00184 are separated by 252 nucleotides
MPMX19_00179: MPMX19_00179 - hypothetical protein, at 189,769 to 190,614
_00179
MPMX19_00180: MPMX19_00180 - hypothetical protein, at 190,670 to 191,221
_00180
MPMX19_00181: MPMX19_00181 - hypothetical protein, at 191,224 to 191,490
_00181
MPMX19_00182: MPMX19_00182 - hypothetical protein, at 191,565 to 192,326
_00182
MPMX19_00183: MPMX19_00183 - hypothetical protein, at 192,326 to 192,571
_00183
MPMX19_00184: MPMX19_00184 - hypothetical protein, at 192,824 to 193,495
_00184
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.607 kb on - strand at 190.607 kb on - strand at 190.607 kb on - strand at 190.607 kb on - strand at 190.607 kb on - strand at 190.613 kb on - strand at 190.613 kb on - strand at 190.613 kb on - strand at 190.613 kb on - strand at 190.613 kb on - strand at 190.613 kb on - strand at 190.641 kb on + strand at 190.642 kb on - strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.656 kb on - strand at 190.656 kb on - strand at 190.656 kb on - strand at 190.656 kb on - strand at 190.656 kb on - strand at 190.906 kb on + strand, within MPMX19_00180 at 190.907 kb on - strand, within MPMX19_00180 at 190.907 kb on - strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.931 kb on + strand, within MPMX19_00180 at 190.931 kb on + strand, within MPMX19_00180 at 190.931 kb on + strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.125 kb on + strand, within MPMX19_00180 at 191.125 kb on + strand, within MPMX19_00180 at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.631 kb on + strand at 191.632 kb on - strand at 191.674 kb on - strand, within MPMX19_00182 at 191.714 kb on - strand, within MPMX19_00182 at 191.714 kb on - strand, within MPMX19_00182 at 191.770 kb on + strand, within MPMX19_00182 at 191.840 kb on + strand, within MPMX19_00182 at 191.840 kb on + strand, within MPMX19_00182 at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.600 kb on + strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.601 kb on - strand at 192.676 kb on + strand at 192.723 kb on + strand at 192.724 kb on - strand at 192.724 kb on - strand at 192.786 kb on + strand at 192.787 kb on - strand at 192.804 kb on + strand at 192.881 kb on + strand at 192.990 kb on + strand, within MPMX19_00184 at 192.991 kb on - strand, within MPMX19_00184 at 193.052 kb on - strand, within MPMX19_00184 at 193.068 kb on - strand, within MPMX19_00184 at 193.084 kb on - strand, within MPMX19_00184 at 193.084 kb on - strand, within MPMX19_00184 at 193.172 kb on + strand, within MPMX19_00184 at 193.173 kb on - strand, within MPMX19_00184 at 193.176 kb on + strand, within MPMX19_00184 at 193.242 kb on + strand, within MPMX19_00184 at 193.242 kb on + strand, within MPMX19_00184 at 193.243 kb on - strand, within MPMX19_00184 at 193.243 kb on - strand, within MPMX19_00184 at 193.243 kb on - strand, within MPMX19_00184 at 193.289 kb on - strand, within MPMX19_00184 at 193.309 kb on - strand, within MPMX19_00184
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 190,607 - +1.2 190,607 - +0.2 190,607 - -1.3 190,607 - +1.7 190,607 - +0.1 190,613 - -1.6 190,613 - -0.4 190,613 - -0.4 190,613 - +0.6 190,613 - +0.6 190,613 - -1.0 190,641 + +0.9 190,642 - -2.6 190,655 + +0.2 190,655 + +1.1 190,655 + -2.1 190,655 + -0.3 190,655 + -0.2 190,655 + -1.0 190,655 + +1.7 190,655 + -1.6 190,655 + -1.9 190,656 - +0.1 190,656 - +0.9 190,656 - -1.2 190,656 - -0.4 190,656 - -0.7 190,906 + MPMX19_00180 0.43 +0.2 190,907 - MPMX19_00180 0.43 -0.1 190,907 - MPMX19_00180 0.43 -1.3 190,920 + MPMX19_00180 0.45 +1.6 190,920 + MPMX19_00180 0.45 +0.3 190,920 + MPMX19_00180 0.45 -0.7 190,920 + MPMX19_00180 0.45 -0.7 190,920 + MPMX19_00180 0.45 +1.9 190,920 + MPMX19_00180 0.45 +0.3 190,920 + MPMX19_00180 0.45 +0.7 190,921 - MPMX19_00180 0.45 +0.2 190,921 - MPMX19_00180 0.45 -1.0 190,921 - MPMX19_00180 0.45 -1.4 190,921 - MPMX19_00180 0.45 -0.2 190,921 - MPMX19_00180 0.45 -0.0 190,921 - MPMX19_00180 0.45 -0.9 190,921 - MPMX19_00180 0.45 +1.3 190,931 + MPMX19_00180 0.47 +1.5 190,931 + MPMX19_00180 0.47 +0.2 190,931 + MPMX19_00180 0.47 -0.3 190,932 - MPMX19_00180 0.47 -0.7 190,932 - MPMX19_00180 0.47 -0.7 190,932 - MPMX19_00180 0.47 -1.0 190,932 - MPMX19_00180 0.47 +0.4 190,932 - MPMX19_00180 0.47 +0.4 190,932 - MPMX19_00180 0.47 -2.0 190,932 - MPMX19_00180 0.47 -0.0 190,932 - MPMX19_00180 0.47 -0.4 191,105 + MPMX19_00180 0.79 +0.6 191,105 + MPMX19_00180 0.79 +0.3 191,105 + MPMX19_00180 0.79 -1.0 191,105 + MPMX19_00180 0.79 -0.8 191,105 + MPMX19_00180 0.79 +0.7 191,105 + MPMX19_00180 0.79 -0.1 191,105 + MPMX19_00180 0.79 -0.7 191,105 + MPMX19_00180 0.79 +1.5 191,105 + MPMX19_00180 0.79 -0.3 191,105 + MPMX19_00180 0.79 -0.1 191,105 + MPMX19_00180 0.79 -1.4 191,106 - MPMX19_00180 0.79 -0.8 191,106 - MPMX19_00180 0.79 -0.7 191,106 - MPMX19_00180 0.79 -0.8 191,106 - MPMX19_00180 0.79 -0.8 191,106 - MPMX19_00180 0.79 -1.4 191,106 - MPMX19_00180 0.79 +1.2 191,106 - MPMX19_00180 0.79 -0.6 191,125 + MPMX19_00180 0.82 -0.4 191,125 + MPMX19_00180 0.82 -0.2 191,182 + -1.1 191,182 + -1.6 191,182 + -0.0 191,182 + +0.9 191,182 + +0.3 191,182 + +0.9 191,182 + -0.1 191,182 + -0.3 191,182 + +0.6 191,182 + -1.7 191,182 + +0.0 191,182 + -0.4 191,182 + -1.2 191,182 + -0.4 191,182 + -2.2 191,182 + -0.5 191,182 + -1.1 191,182 + -1.7 191,183 - -0.7 191,183 - +0.3 191,183 - +0.3 191,183 - -0.3 191,183 - +0.0 191,183 - -0.1 191,183 - -1.8 191,183 - -1.6 191,183 - -0.7 191,183 - +0.7 191,183 - +1.9 191,183 - -0.1 191,183 - -0.3 191,311 + MPMX19_00181 0.33 +0.9 191,311 + MPMX19_00181 0.33 -0.6 191,311 + MPMX19_00181 0.33 -0.9 191,311 + MPMX19_00181 0.33 -0.9 191,311 + MPMX19_00181 0.33 -0.7 191,311 + MPMX19_00181 0.33 +0.6 191,311 + MPMX19_00181 0.33 -0.9 191,312 - MPMX19_00181 0.33 -1.1 191,312 - MPMX19_00181 0.33 -0.8 191,312 - MPMX19_00181 0.33 -0.2 191,312 - MPMX19_00181 0.33 -0.3 191,312 - MPMX19_00181 0.33 +0.2 191,312 - MPMX19_00181 0.33 -0.7 191,312 - MPMX19_00181 0.33 -0.7 191,312 - MPMX19_00181 0.33 +0.9 191,312 - MPMX19_00181 0.33 -0.1 191,631 + +0.3 191,632 - -1.6 191,674 - MPMX19_00182 0.14 -1.4 191,714 - MPMX19_00182 0.20 -0.6 191,714 - MPMX19_00182 0.20 -1.4 191,770 + MPMX19_00182 0.27 -0.0 191,840 + MPMX19_00182 0.36 -0.8 191,840 + MPMX19_00182 0.36 -1.3 192,600 + +1.3 192,600 + -0.1 192,600 + -1.0 192,600 + -0.0 192,600 + -0.1 192,600 + -1.2 192,601 - +0.2 192,601 - -1.3 192,601 - +0.2 192,601 - -0.4 192,601 - -1.4 192,676 + -1.3 192,723 + -1.5 192,724 - -0.3 192,724 - +1.4 192,786 + +1.6 192,787 - +0.1 192,804 + +0.1 192,881 + -1.4 192,990 + MPMX19_00184 0.25 -1.3 192,991 - MPMX19_00184 0.25 +0.1 193,052 - MPMX19_00184 0.34 +0.7 193,068 - MPMX19_00184 0.36 -0.8 193,084 - MPMX19_00184 0.39 -1.3 193,084 - MPMX19_00184 0.39 +0.1 193,172 + MPMX19_00184 0.52 -2.6 193,173 - MPMX19_00184 0.52 -0.7 193,176 + MPMX19_00184 0.52 +1.1 193,242 + MPMX19_00184 0.62 +0.1 193,242 + MPMX19_00184 0.62 +0.6 193,243 - MPMX19_00184 0.62 +0.7 193,243 - MPMX19_00184 0.62 +0.0 193,243 - MPMX19_00184 0.62 -1.1 193,289 - MPMX19_00184 0.69 -0.9 193,309 - MPMX19_00184 0.72 -1.9
Or see this region's nucleotide sequence