Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00163

Experiment: NL-CCM, start OD=0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.1
171,405	-		MPMX19_00162	0.44	+1.4
171,416	+		MPMX19_00162	0.44	-0.3
171,416	+		MPMX19_00162	0.44	-0.1
171,416	+		MPMX19_00162	0.44	-1.2
171,417	-		MPMX19_00162	0.44	-2.0
171,417	-		MPMX19_00162	0.44	-0.9
171,417	-		MPMX19_00162	0.44	-0.5
171,417	-		MPMX19_00162	0.44	+0.3
171,557	+		MPMX19_00162	0.53	-1.7
171,557	+		MPMX19_00162	0.53	-0.1
171,557	+		MPMX19_00162	0.53	-1.8
171,557	+		MPMX19_00162	0.53	+0.4
171,557	+		MPMX19_00162	0.53	-0.8
171,558	-		MPMX19_00162	0.53	-1.7
171,558	-		MPMX19_00162	0.53	-2.3
171,558	-		MPMX19_00162	0.53	-1.5
171,558	-		MPMX19_00162	0.53	-0.1
171,558	-		MPMX19_00162	0.53	-0.4
171,558	-		MPMX19_00162	0.53	-0.7
171,749	+		MPMX19_00162	0.64	-0.9
171,749	+		MPMX19_00162	0.64	+0.2
171,749	+		MPMX19_00162	0.64	-0.8
171,749	+		MPMX19_00162	0.64	-0.1
171,749	+		MPMX19_00162	0.64	+1.9
171,749	+		MPMX19_00162	0.64	+0.3
171,749	+		MPMX19_00162	0.64	-0.4
171,749	+		MPMX19_00162	0.64	-1.0
171,749	+		MPMX19_00162	0.64	-1.9
171,749	+		MPMX19_00162	0.64	-0.8
171,749	+		MPMX19_00162	0.64	+0.7
171,749	+		MPMX19_00162	0.64	+0.8
171,749	+		MPMX19_00162	0.64	-0.1
171,749	+		MPMX19_00162	0.64	+0.9
171,749	+		MPMX19_00162	0.64	+0.9
171,749	+		MPMX19_00162	0.64	+0.3
171,749	+		MPMX19_00162	0.64	+1.5
171,749	+		MPMX19_00162	0.64	+0.5
171,749	+		MPMX19_00162	0.64	-1.3
171,749	+		MPMX19_00162	0.64	-0.7
171,749	+		MPMX19_00162	0.64	+1.1
171,750	-		MPMX19_00162	0.65	-0.3
171,750	-		MPMX19_00162	0.65	-0.8
171,750	-		MPMX19_00162	0.65	-0.2
171,750	-		MPMX19_00162	0.65	-0.3
171,750	-		MPMX19_00162	0.65	-0.3
171,750	-		MPMX19_00162	0.65	+0.5
171,750	-		MPMX19_00162	0.65	-0.6
171,750	-		MPMX19_00162	0.65	-1.6
171,750	-		MPMX19_00162	0.65	-1.3
171,750	-		MPMX19_00162	0.65	-1.4
171,750	-		MPMX19_00162	0.65	-0.9
171,750	-		MPMX19_00162	0.65	-0.3
171,750	-		MPMX19_00162	0.65	-1.3
171,750	-		MPMX19_00162	0.65	+0.1
171,750	-		MPMX19_00162	0.65	-0.8
171,750	-		MPMX19_00162	0.65	-1.1
171,750	-		MPMX19_00162	0.65	-0.7
171,750	-		MPMX19_00162	0.65	-0.3
171,750	-		MPMX19_00162	0.65	-2.6
171,750	-		MPMX19_00162	0.65	-1.3
171,750	-		MPMX19_00162	0.65	-0.5
171,858	+		MPMX19_00162	0.71	-0.1
171,858	+		MPMX19_00162	0.71	-1.8
171,858	+		MPMX19_00162	0.71	-0.1
171,858	+		MPMX19_00162	0.71	-1.3
171,858	+		MPMX19_00162	0.71	-0.5
171,858	+		MPMX19_00162	0.71	+0.6
171,858	+		MPMX19_00162	0.71	-1.3
171,858	+		MPMX19_00162	0.71	-0.6
171,858	+		MPMX19_00162	0.71	-1.1
171,859	-		MPMX19_00162	0.71	+0.0
171,859	-		MPMX19_00162	0.71	+0.0
171,859	-		MPMX19_00162	0.71	-0.1
171,859	-		MPMX19_00162	0.71	-0.4
171,859	-		MPMX19_00162	0.71	+0.0
171,859	-		MPMX19_00162	0.71	-0.4
171,859	-		MPMX19_00162	0.71	-0.7
171,859	-		MPMX19_00162	0.71	+1.9
171,872	+		MPMX19_00162	0.72	-0.4
171,872	+		MPMX19_00162	0.72	-0.6
171,872	+		MPMX19_00162	0.72	+2.3
171,872	+		MPMX19_00162	0.72	-1.1
171,872	+		MPMX19_00162	0.72	-0.9
171,872	+		MPMX19_00162	0.72	-0.9
171,872	+		MPMX19_00162	0.72	-0.4
171,872	+		MPMX19_00162	0.72	+0.4
171,872	+		MPMX19_00162	0.72	+0.6
171,872	+		MPMX19_00162	0.72	-0.1
171,872	+		MPMX19_00162	0.72	-0.1
171,872	+		MPMX19_00162	0.72	-1.0
171,872	+		MPMX19_00162	0.72	-0.4
171,872	+		MPMX19_00162	0.72	+0.4
171,872	+		MPMX19_00162	0.72	+2.3
171,873	-		MPMX19_00162	0.72	+0.2
171,873	-		MPMX19_00162	0.72	-0.0
171,873	-		MPMX19_00162	0.72	-0.3
171,873	-		MPMX19_00162	0.72	+1.9
171,873	-		MPMX19_00162	0.72	-1.1
171,908	+		MPMX19_00162	0.74	-1.7
171,908	+		MPMX19_00162	0.74	-1.2
171,908	+		MPMX19_00162	0.74	-0.3
171,908	+		MPMX19_00162	0.74	+0.6
171,908	+		MPMX19_00162	0.74	-1.4
171,908	+		MPMX19_00162	0.74	+0.6
171,908	+		MPMX19_00162	0.74	+0.5
171,908	+		MPMX19_00162	0.74	-1.3
171,909	-		MPMX19_00162	0.74	+0.5
171,909	-		MPMX19_00162	0.74	+1.3
171,909	-		MPMX19_00162	0.74	-0.7
171,909	-		MPMX19_00162	0.74	-0.0
172,049	+		MPMX19_00162	0.83	-0.1
172,049	+		MPMX19_00162	0.83	-0.4
172,049	+		MPMX19_00162	0.83	+0.1
172,049	+		MPMX19_00162	0.83	+1.4
172,049	+		MPMX19_00162	0.83	-0.9
172,049	+		MPMX19_00162	0.83	+1.5
172,049	+		MPMX19_00162	0.83	+0.4
172,049	+		MPMX19_00162	0.83	-0.4
172,049	+		MPMX19_00162	0.83	+1.1
172,049	+		MPMX19_00162	0.83	+0.1
172,049	+		MPMX19_00162	0.83	-0.4
172,049	+		MPMX19_00162	0.83	-1.7
172,049	+		MPMX19_00162	0.83	-0.1
172,049	+		MPMX19_00162	0.83	+0.7
172,049	+		MPMX19_00162	0.83	-0.7
172,049	+		MPMX19_00162	0.83	-1.7
172,049	+		MPMX19_00162	0.83	-0.1
172,050	-		MPMX19_00162	0.83	+0.1
172,050	-		MPMX19_00162	0.83	-0.3
172,050	-		MPMX19_00162	0.83	+0.7
172,050	-		MPMX19_00162	0.83	-1.0
172,050	-		MPMX19_00162	0.83	+0.3
172,050	-		MPMX19_00162	0.83	+0.6
172,050	-		MPMX19_00162	0.83	-0.1
172,050	-		MPMX19_00162	0.83	+0.1
172,050	-		MPMX19_00162	0.83	-0.7
172,050	-		MPMX19_00162	0.83	+0.0
172,050	-		MPMX19_00162	0.83	+0.1
172,050	-		MPMX19_00162	0.83	-0.7
172,050	-		MPMX19_00162	0.83	+0.3
172,050	-		MPMX19_00162	0.83	-1.2
172,050	-		MPMX19_00162	0.83	-1.8
172,050	-		MPMX19_00162	0.83	-1.3
172,103	+		MPMX19_00162	0.86	-0.1
172,103	+		MPMX19_00162	0.86	-1.0
172,104	-		MPMX19_00162	0.86	-1.6
172,104	-		MPMX19_00162	0.86	+0.8
172,104	-		MPMX19_00162	0.86	-0.1
172,104	-		MPMX19_00162	0.86	+0.9
172,104	-		MPMX19_00162	0.86	-0.1
172,104	-		MPMX19_00162	0.86	-0.8
172,104	-		MPMX19_00162	0.86	-1.3
172,109	+		MPMX19_00162	0.86	+0.3
172,109	+		MPMX19_00162	0.86	-1.1
172,109	+		MPMX19_00162	0.86	-0.1
172,110	-		MPMX19_00162	0.86	-0.0
172,110	-		MPMX19_00162	0.86	+0.0
172,148	+		MPMX19_00162	0.89	+0.6
172,148	+		MPMX19_00162	0.89	+0.1
172,148	+		MPMX19_00162	0.89	-0.9
172,148	+		MPMX19_00162	0.89	+0.3
172,148	+		MPMX19_00162	0.89	-2.2
172,148	+		MPMX19_00162	0.89	-0.5
172,148	+		MPMX19_00162	0.89	+0.3
172,148	+		MPMX19_00162	0.89	-0.2
172,148	+		MPMX19_00162	0.89	+1.3
172,148	+		MPMX19_00162	0.89	-0.1
172,148	+		MPMX19_00162	0.89	-0.1
172,149	-		MPMX19_00162	0.89	-0.3
172,149	-		MPMX19_00162	0.89	-1.7
172,149	-		MPMX19_00162	0.89	+0.4
172,149	-		MPMX19_00162	0.89	+2.3
172,149	-		MPMX19_00162	0.89	-1.3
172,149	-		MPMX19_00162	0.89	-1.4
172,149	-		MPMX19_00162	0.89	-0.4
172,149	-		MPMX19_00162	0.89	+0.2
172,149	-		MPMX19_00162	0.89	-0.2
172,149	-		MPMX19_00162	0.89	-0.5
172,149	-		MPMX19_00162	0.89	-0.3
172,204	+				-0.6
172,204	+				+0.1
172,205	-				+0.9
172,282	-				-0.1
172,328	+				-0.9
172,328	+				-1.3
172,328	+				-0.2
172,328	+				-1.3
172,328	+				-0.2
172,328	+				-0.9
172,328	+				+0.4
172,328	+				-1.1
172,328	+				+0.3
172,328	+				+0.2
172,328	+				+0.7
172,328	+				+0.9
172,328	+				-0.5
172,328	+				-0.9
172,328	+				-0.0
172,328	+				-2.3
172,328	+				+0.6
172,328	+				-0.3
172,328	+				-0.0
172,328	+				-0.9
172,328	+				-0.1
172,328	+				+0.3
172,328	+				+0.1
172,328	+				+0.2
172,328	+				+1.7
172,329	-				+0.9
172,329	-				-1.1
172,329	-				-0.1
172,329	-				-2.1
172,329	-				-1.9
172,329	-				+0.3
172,329	-				-1.4
172,329	-				-0.1
172,329	-				+0.6
172,329	-				-1.5
172,329	-				+0.4
172,329	-				+1.3
172,329	-				-1.9
172,329	-				-1.4
172,329	-				-1.5
172,329	-				-0.1
172,329	-				-1.6
172,329	-				+1.4
172,329	-				-1.2
172,329	-				-1.6
172,329	-				+1.1
172,332	+				-2.1
172,332	+				-0.3
172,332	+				-1.1
172,332	+				-0.4
172,332	+				-1.3
172,332	+				-2.6
172,332	+				-3.9
172,332	+				+0.0
172,332	+				-1.4
172,332	+				-1.0
172,332	+				-0.9
172,332	+				-0.3
172,332	+				-0.9
172,332	+				-0.1
172,332	+				+0.2
172,333	-				+0.0
172,333	-				-0.5
172,333	-				+0.6
172,333	-				+0.3
172,333	-				-1.7
172,333	-				-0.7
172,333	-				-1.6
172,333	-				-3.1
172,333	-				+0.5
172,333	-				-1.7
172,333	-				-0.0
172,333	-				-0.1
172,333	-				-0.9
172,333	-				-0.9
172,447	+		MPMX19_00163	0.49	-0.6
172,447	+		MPMX19_00163	0.49	-0.9
172,447	+		MPMX19_00163	0.49	-0.8
172,448	-		MPMX19_00163	0.49	-0.1
172,480	+		MPMX19_00163	0.63	+0.2
172,480	+		MPMX19_00163	0.63	-2.3
172,480	+		MPMX19_00163	0.63	-1.6
172,480	+		MPMX19_00163	0.63	-0.1
172,480	+		MPMX19_00163	0.63	-0.7
172,480	+		MPMX19_00163	0.63	-0.4
172,480	+		MPMX19_00163	0.63	-0.8
172,481	-		MPMX19_00163	0.63	-1.9
172,481	-		MPMX19_00163	0.63	-0.9
172,481	-		MPMX19_00163	0.63	-0.5
172,481	-		MPMX19_00163	0.63	-1.7
172,481	-		MPMX19_00163	0.63	-0.4
172,481	-		MPMX19_00163	0.63	-0.6
172,481	-		MPMX19_00163	0.63	-0.1
172,546	+				+0.0
172,546	+				-2.3
172,546	+				+0.4
172,546	+				-0.7
172,546	+				-1.3
172,546	+				-0.7
172,546	+				+1.3
172,546	+				-2.4
172,546	+				-1.5
172,546	+				-1.7
172,546	+				-2.4
172,546	+				+0.1
172,546	+				-0.4
172,547	-				-0.4
172,547	-				-0.3
172,547	-				-0.5
172,547	-				+0.4
172,547	-				-0.8
172,547	-				-0.7
172,547	-				-0.9
172,547	-				+0.3
172,547	-				-1.4
172,547	-				-1.1
172,547	-				+0.6
172,866	+		MPMX19_00164	0.19	+1.3
172,866	+		MPMX19_00164	0.19	+0.9
172,866	+		MPMX19_00164	0.19	+1.9
172,866	+		MPMX19_00164	0.19	-0.1
172,867	-		MPMX19_00164	0.19	-0.6
172,867	-		MPMX19_00164	0.19	-0.1
173,187	+		MPMX19_00164	0.39	-0.1
173,187	+		MPMX19_00164	0.39	-0.6
173,187	+		MPMX19_00164	0.39	+0.1
173,188	-		MPMX19_00164	0.39	+0.8
173,205	+		MPMX19_00164	0.40	-1.2
173,205	+		MPMX19_00164	0.40	+0.9
173,205	+		MPMX19_00164	0.40	+1.9
173,205	+		MPMX19_00164	0.40	-0.9
173,205	+		MPMX19_00164	0.40	-0.5
173,205	+		MPMX19_00164	0.40	+0.2
173,205	+		MPMX19_00164	0.40	-1.3
173,205	+		MPMX19_00164	0.40	+0.7
173,205	+		MPMX19_00164	0.40	+1.0
173,206	-		MPMX19_00164	0.40	-0.1
173,206	-		MPMX19_00164	0.40	-0.1
173,206	-		MPMX19_00164	0.40	+0.5
173,206	-		MPMX19_00164	0.40	-1.1
173,206	-		MPMX19_00164	0.40	+0.0
173,206	-		MPMX19_00164	0.40	-1.4
173,206	-		MPMX19_00164	0.40	-0.3
173,206	-		MPMX19_00164	0.40	-0.4
173,206	-		MPMX19_00164	0.40	+0.3
173,206	-		MPMX19_00164	0.40	-0.7
173,206	-		MPMX19_00164	0.40	+0.1
173,514	+		MPMX19_00164	0.59	+1.1
173,514	+		MPMX19_00164	0.59	+0.3
173,514	+		MPMX19_00164	0.59	-2.5
173,514	+		MPMX19_00164	0.59	+1.2
173,514	+		MPMX19_00164	0.59	+1.7
173,514	+		MPMX19_00164	0.59	+0.2
173,514	+		MPMX19_00164	0.59	+2.5
173,514	+		MPMX19_00164	0.59	-1.2
173,514	+		MPMX19_00164	0.59	+0.1
173,514	+		MPMX19_00164	0.59	-0.3
173,514	+		MPMX19_00164	0.59	+0.6
173,514	+		MPMX19_00164	0.59	+0.1
173,514	+		MPMX19_00164	0.59	+1.2
173,514	+		MPMX19_00164	0.59	+0.1
173,514	+		MPMX19_00164	0.59	-0.6
173,514	+		MPMX19_00164	0.59	+1.2
173,514	+		MPMX19_00164	0.59	-0.4
173,514	+		MPMX19_00164	0.59	-0.3
173,514	+		MPMX19_00164	0.59	+0.0
173,514	+		MPMX19_00164	0.59	-1.3
173,515	-		MPMX19_00164	0.59	-0.1
173,515	-		MPMX19_00164	0.59	+0.3
173,515	-		MPMX19_00164	0.59	-0.4
173,515	-		MPMX19_00164	0.59	-0.0
173,515	-		MPMX19_00164	0.59	+0.3
173,515	-		MPMX19_00164	0.59	-0.7
173,515	-		MPMX19_00164	0.59	-0.3
173,515	-		MPMX19_00164	0.59	+0.9
173,515	-		MPMX19_00164	0.59	-0.4
173,515	-		MPMX19_00164	0.59	-2.7
173,515	-		MPMX19_00164	0.59	-0.5
173,515	-		MPMX19_00164	0.59	-1.3
173,515	-		MPMX19_00164	0.59	-0.3
173,515	-		MPMX19_00164	0.59	-0.1
173,515	-		MPMX19_00164	0.59	-2.4
173,515	-		MPMX19_00164	0.59	-1.0
173,515	-		MPMX19_00164	0.59	-0.6
173,515	-		MPMX19_00164	0.59	+0.3
173,515	-		MPMX19_00164	0.59	-0.0
173,515	-		MPMX19_00164	0.59	+0.1
173,515	-		MPMX19_00164	0.59	-1.7
173,515	-		MPMX19_00164	0.59	-0.4
173,515	-		MPMX19_00164	0.59	-0.1
173,515	-		MPMX19_00164	0.59	+0.3
173,515	-		MPMX19_00164	0.59	-2.1
173,515	-		MPMX19_00164	0.59	-0.2
173,515	-		MPMX19_00164	0.59	+0.1
173,515	-		MPMX19_00164	0.59	+1.1
173,515	-		MPMX19_00164	0.59	+0.6