Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00140

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00138 and MPMX19_00139 are separated by 193 nucleotidesMPMX19_00139 and MPMX19_00140 are separated by 10 nucleotidesMPMX19_00140 and MPMX19_00141 are separated by 103 nucleotidesMPMX19_00141 and MPMX19_00142 are separated by 12 nucleotidesMPMX19_00142 and MPMX19_00143 overlap by 4 nucleotides MPMX19_00138: MPMX19_00138 - hypothetical protein, at 152,146 to 153,456 _00138 MPMX19_00139: MPMX19_00139 - hypothetical protein, at 153,650 to 153,925 _00139 MPMX19_00140: MPMX19_00140 - hypothetical protein, at 153,936 to 154,703 _00140 MPMX19_00141: MPMX19_00141 - hypothetical protein, at 154,807 to 155,061 _00141 MPMX19_00142: MPMX19_00142 - hypothetical protein, at 155,074 to 155,256 _00142 MPMX19_00143: MPMX19_00143 - Tyrosine recombinase XerC, at 155,253 to 156,251 _00143 Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1 2at 152.936 kb on + strand, within MPMX19_00138at 152.936 kb on + strand, within MPMX19_00138at 152.937 kb on - strand, within MPMX19_00138at 152.949 kb on + strand, within MPMX19_00138at 153.046 kb on + strand, within MPMX19_00138at 153.046 kb on + strand, within MPMX19_00138at 153.047 kb on - strand, within MPMX19_00138at 153.047 kb on - strand, within MPMX19_00138at 153.047 kb on - strand, within MPMX19_00138at 153.047 kb on - strand, within MPMX19_00138at 153.156 kb on + strand, within MPMX19_00138at 153.445 kb on + strandat 153.537 kb on + strandat 153.553 kb on + strandat 153.689 kb on + strand, within MPMX19_00139at 153.689 kb on + strand, within MPMX19_00139at 153.689 kb on + strand, within MPMX19_00139at 153.690 kb on - strand, within MPMX19_00139at 153.690 kb on - strand, within MPMX19_00139at 153.690 kb on - strand, within MPMX19_00139at 153.809 kb on + strand, within MPMX19_00139at 153.809 kb on + strand, within MPMX19_00139at 153.809 kb on + strand, within MPMX19_00139at 153.810 kb on - strand, within MPMX19_00139at 153.810 kb on - strand, within MPMX19_00139at 153.810 kb on - strand, within MPMX19_00139at 153.810 kb on - strand, within MPMX19_00139at 153.810 kb on - strand, within MPMX19_00139at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.882 kb on + strand, within MPMX19_00141at 154.882 kb on + strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 155.126 kb on - strand, within MPMX19_00142at 155.145 kb on - strand, within MPMX19_00142at 155.145 kb on - strand, within MPMX19_00142at 155.145 kb on - strand, within MPMX19_00142at 155.364 kb on + strand, within MPMX19_00143at 155.364 kb on + strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.397 kb on + strand, within MPMX19_00143at 155.680 kb on - strand, within MPMX19_00143

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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152,936 + MPMX19_00138 0.60 -0.4
152,936 + MPMX19_00138 0.60 +0.3
152,937 - MPMX19_00138 0.60 -1.7
152,949 + MPMX19_00138 0.61 -2.6
153,046 + MPMX19_00138 0.69 -0.9
153,046 + MPMX19_00138 0.69 -1.9
153,047 - MPMX19_00138 0.69 +0.2
153,047 - MPMX19_00138 0.69 -1.3
153,047 - MPMX19_00138 0.69 -0.3
153,047 - MPMX19_00138 0.69 -1.0
153,156 + MPMX19_00138 0.77 +1.1
153,445 + -1.3
153,537 + +1.7
153,553 + +0.4
153,689 + MPMX19_00139 0.14 +0.9
153,689 + MPMX19_00139 0.14 -0.8
153,689 + MPMX19_00139 0.14 -0.7
153,690 - MPMX19_00139 0.14 -0.3
153,690 - MPMX19_00139 0.14 -0.7
153,690 - MPMX19_00139 0.14 -0.8
153,809 + MPMX19_00139 0.58 -1.1
153,809 + MPMX19_00139 0.58 -1.1
153,809 + MPMX19_00139 0.58 +0.5
153,810 - MPMX19_00139 0.58 +0.7
153,810 - MPMX19_00139 0.58 +0.2
153,810 - MPMX19_00139 0.58 -1.0
153,810 - MPMX19_00139 0.58 -0.3
153,810 - MPMX19_00139 0.58 +1.5
154,410 + MPMX19_00140 0.62 -1.1
154,410 + MPMX19_00140 0.62 -0.7
154,410 + MPMX19_00140 0.62 -1.2
154,410 + MPMX19_00140 0.62 -1.1
154,410 + MPMX19_00140 0.62 -1.3
154,410 + MPMX19_00140 0.62 -2.0
154,410 + MPMX19_00140 0.62 -0.2
154,410 + MPMX19_00140 0.62 +0.9
154,410 + MPMX19_00140 0.62 +0.2
154,410 + MPMX19_00140 0.62 -2.4
154,410 + MPMX19_00140 0.62 +0.9
154,410 + MPMX19_00140 0.62 -1.0
154,410 + MPMX19_00140 0.62 -0.3
154,410 + MPMX19_00140 0.62 -0.1
154,410 + MPMX19_00140 0.62 -0.5
154,411 - MPMX19_00140 0.62 +0.1
154,411 - MPMX19_00140 0.62 -0.8
154,411 - MPMX19_00140 0.62 -1.3
154,411 - MPMX19_00140 0.62 -0.5
154,411 - MPMX19_00140 0.62 +0.3
154,411 - MPMX19_00140 0.62 -0.3
154,411 - MPMX19_00140 0.62 -0.8
154,411 - MPMX19_00140 0.62 -1.1
154,411 - MPMX19_00140 0.62 -0.7
154,411 - MPMX19_00140 0.62 -1.1
154,584 + MPMX19_00140 0.84 -0.5
154,584 + MPMX19_00140 0.84 -2.7
154,584 + MPMX19_00140 0.84 -1.0
154,584 + MPMX19_00140 0.84 -0.0
154,584 + MPMX19_00140 0.84 -1.3
154,584 + MPMX19_00140 0.84 -0.4
154,584 + MPMX19_00140 0.84 -0.8
154,584 + MPMX19_00140 0.84 -0.9
154,584 + MPMX19_00140 0.84 -1.4
154,584 + MPMX19_00140 0.84 -0.8
154,585 - MPMX19_00140 0.85 -1.5
154,585 - MPMX19_00140 0.85 -1.3
154,585 - MPMX19_00140 0.85 -0.3
154,585 - MPMX19_00140 0.85 -0.0
154,585 - MPMX19_00140 0.85 +0.9
154,882 + MPMX19_00141 0.29 -0.5
154,882 + MPMX19_00141 0.29 -0.7
154,883 - MPMX19_00141 0.30 -1.0
154,883 - MPMX19_00141 0.30 +0.3
154,883 - MPMX19_00141 0.30 +0.1
154,883 - MPMX19_00141 0.30 -0.7
154,883 - MPMX19_00141 0.30 +0.4
154,883 - MPMX19_00141 0.30 -0.9
154,883 - MPMX19_00141 0.30 -2.6
154,883 - MPMX19_00141 0.30 -0.4
154,883 - MPMX19_00141 0.30 +0.9
154,883 - MPMX19_00141 0.30 -1.0
155,126 - MPMX19_00142 0.28 +0.4
155,145 - MPMX19_00142 0.39 -0.5
155,145 - MPMX19_00142 0.39 +0.7
155,145 - MPMX19_00142 0.39 -0.9
155,364 + MPMX19_00143 0.11 +1.3
155,364 + MPMX19_00143 0.11 -0.9
155,365 - MPMX19_00143 0.11 -0.1
155,365 - MPMX19_00143 0.11 +0.4
155,365 - MPMX19_00143 0.11 +0.2
155,365 - MPMX19_00143 0.11 +0.4
155,365 - MPMX19_00143 0.11 -1.7
155,365 - MPMX19_00143 0.11 -0.9
155,365 - MPMX19_00143 0.11 +0.0
155,365 - MPMX19_00143 0.11 +0.3
155,365 - MPMX19_00143 0.11 -0.5
155,365 - MPMX19_00143 0.11 -2.2
155,365 - MPMX19_00143 0.11 -0.3
155,365 - MPMX19_00143 0.11 -0.3
155,365 - MPMX19_00143 0.11 +0.7
155,365 - MPMX19_00143 0.11 +0.7
155,365 - MPMX19_00143 0.11 +1.0
155,365 - MPMX19_00143 0.11 +1.2
155,365 - MPMX19_00143 0.11 -0.7
155,365 - MPMX19_00143 0.11 -1.6
155,397 + MPMX19_00143 0.14 -0.6
155,680 - MPMX19_00143 0.43 +2.5

Or see this region's nucleotide sequence