Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00123 and MPMX19_00124 are separated by 103 nucleotides MPMX19_00124 and MPMX19_00125 are separated by 136 nucleotides
MPMX19_00123: MPMX19_00123 - ATP-dependent DNA helicase RecQ, at 134,562 to 136,475
_00123
MPMX19_00124: MPMX19_00124 - tRNA-Thr, at 136,579 to 136,653
_00124
MPMX19_00125: MPMX19_00125 - hypothetical protein, at 136,790 to 137,851
_00125
Position (kb) 136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 135.606 kb on + strand, within MPMX19_00123 at 135.607 kb on - strand, within MPMX19_00123 at 135.607 kb on - strand, within MPMX19_00123 at 135.607 kb on - strand, within MPMX19_00123 at 135.753 kb on + strand, within MPMX19_00123 at 135.753 kb on + strand, within MPMX19_00123 at 135.753 kb on + strand, within MPMX19_00123 at 135.753 kb on + strand, within MPMX19_00123 at 135.753 kb on + strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.754 kb on - strand, within MPMX19_00123 at 135.861 kb on + strand, within MPMX19_00123 at 135.861 kb on + strand, within MPMX19_00123 at 135.862 kb on - strand, within MPMX19_00123 at 136.009 kb on - strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.056 kb on + strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.057 kb on - strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.120 kb on + strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.121 kb on - strand, within MPMX19_00123 at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.327 kb on - strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.346 kb on + strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.347 kb on - strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.711 kb on - strand at 136.711 kb on - strand at 136.711 kb on - strand at 136.813 kb on + strand at 136.813 kb on + strand at 136.814 kb on - strand at 136.814 kb on - strand at 136.814 kb on - strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.863 kb on + strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 136.864 kb on - strand at 137.078 kb on + strand, within MPMX19_00125 at 137.079 kb on - strand, within MPMX19_00125 at 137.079 kb on - strand, within MPMX19_00125 at 137.079 kb on - strand, within MPMX19_00125 at 137.079 kb on - strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.187 kb on + strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.188 kb on - strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.478 kb on + strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.479 kb on - strand, within MPMX19_00125 at 137.562 kb on + strand, within MPMX19_00125 at 137.595 kb on + strand, within MPMX19_00125 at 137.595 kb on + strand, within MPMX19_00125 at 137.595 kb on + strand, within MPMX19_00125 at 137.595 kb on + strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.596 kb on - strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.613 kb on + strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125 at 137.614 kb on - strand, within MPMX19_00125
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 135,606 + MPMX19_00123 0.55 -0.7 135,607 - MPMX19_00123 0.55 +0.2 135,607 - MPMX19_00123 0.55 +0.1 135,607 - MPMX19_00123 0.55 -0.6 135,753 + MPMX19_00123 0.62 -0.3 135,753 + MPMX19_00123 0.62 -0.4 135,753 + MPMX19_00123 0.62 -2.0 135,753 + MPMX19_00123 0.62 -0.4 135,753 + MPMX19_00123 0.62 -0.8 135,754 - MPMX19_00123 0.62 -0.6 135,754 - MPMX19_00123 0.62 -0.4 135,754 - MPMX19_00123 0.62 -0.8 135,754 - MPMX19_00123 0.62 -2.3 135,754 - MPMX19_00123 0.62 +0.1 135,754 - MPMX19_00123 0.62 +0.3 135,754 - MPMX19_00123 0.62 -1.0 135,861 + MPMX19_00123 0.68 -1.9 135,861 + MPMX19_00123 0.68 +0.6 135,862 - MPMX19_00123 0.68 -0.9 136,009 - MPMX19_00123 0.76 +1.3 136,056 + MPMX19_00123 0.78 -0.1 136,056 + MPMX19_00123 0.78 -1.6 136,056 + MPMX19_00123 0.78 -0.5 136,056 + MPMX19_00123 0.78 +1.9 136,056 + MPMX19_00123 0.78 -0.9 136,056 + MPMX19_00123 0.78 -1.1 136,057 - MPMX19_00123 0.78 -1.4 136,057 - MPMX19_00123 0.78 -0.9 136,057 - MPMX19_00123 0.78 -1.4 136,057 - MPMX19_00123 0.78 -1.1 136,057 - MPMX19_00123 0.78 -0.1 136,057 - MPMX19_00123 0.78 +0.3 136,120 + MPMX19_00123 0.81 +0.2 136,120 + MPMX19_00123 0.81 +0.9 136,120 + MPMX19_00123 0.81 -0.7 136,120 + MPMX19_00123 0.81 -1.7 136,120 + MPMX19_00123 0.81 -0.0 136,120 + MPMX19_00123 0.81 -0.4 136,120 + MPMX19_00123 0.81 +0.2 136,120 + MPMX19_00123 0.81 -0.9 136,120 + MPMX19_00123 0.81 -0.1 136,120 + MPMX19_00123 0.81 -1.1 136,120 + MPMX19_00123 0.81 +0.2 136,120 + MPMX19_00123 0.81 +0.1 136,120 + MPMX19_00123 0.81 -1.8 136,120 + MPMX19_00123 0.81 -0.9 136,120 + MPMX19_00123 0.81 +1.4 136,121 - MPMX19_00123 0.81 +0.1 136,121 - MPMX19_00123 0.81 +1.6 136,121 - MPMX19_00123 0.81 -1.1 136,121 - MPMX19_00123 0.81 -0.6 136,121 - MPMX19_00123 0.81 -2.8 136,121 - MPMX19_00123 0.81 +0.6 136,121 - MPMX19_00123 0.81 -0.4 136,121 - MPMX19_00123 0.81 +1.7 136,121 - MPMX19_00123 0.81 +0.3 136,121 - MPMX19_00123 0.81 +0.1 136,121 - MPMX19_00123 0.81 +0.7 136,121 - MPMX19_00123 0.81 +0.1 136,121 - MPMX19_00123 0.81 -0.1 136,121 - MPMX19_00123 0.81 -1.0 136,326 + +0.2 136,326 + +0.3 136,326 + -1.2 136,326 + +0.5 136,326 + -0.5 136,326 + +0.1 136,326 + -0.7 136,326 + +0.1 136,326 + -1.7 136,326 + -0.4 136,326 + -1.2 136,326 + -1.1 136,326 + -1.3 136,327 - +0.4 136,327 - +0.8 136,327 - +0.0 136,327 - -1.3 136,327 - +1.0 136,327 - -0.2 136,327 - +0.0 136,327 - -1.3 136,327 - -0.2 136,327 - -0.0 136,327 - +0.1 136,327 - -0.9 136,327 - -0.8 136,327 - -0.5 136,327 - +0.1 136,327 - -0.9 136,327 - -0.7 136,327 - +0.4 136,346 + -2.4 136,346 + +0.1 136,346 + -0.3 136,346 + +0.9 136,346 + +0.1 136,346 + +0.6 136,346 + +0.3 136,346 + +0.9 136,346 + -1.0 136,346 + -1.0 136,346 + -0.3 136,346 + +0.1 136,346 + -0.2 136,346 + -0.7 136,346 + -0.7 136,346 + +0.6 136,346 + -1.2 136,346 + -0.1 136,346 + -1.6 136,346 + -1.9 136,346 + +0.0 136,346 + -1.7 136,346 + -0.6 136,346 + -0.3 136,346 + -0.8 136,346 + -1.0 136,346 + +0.6 136,346 + -1.2 136,346 + +0.4 136,347 - +0.7 136,347 - +0.2 136,347 - +1.9 136,347 - -0.6 136,347 - -1.6 136,347 - -1.3 136,347 - -0.7 136,347 - +0.3 136,347 - -0.9 136,347 - +0.7 136,347 - -1.4 136,347 - +0.3 136,347 - +0.4 136,347 - +0.1 136,347 - -0.9 136,347 - +0.5 136,347 - -0.4 136,347 - +1.5 136,347 - +1.2 136,347 - -0.1 136,347 - -1.3 136,347 - +0.7 136,347 - -1.0 136,347 - +1.2 136,347 - -0.9 136,347 - -0.4 136,347 - +0.0 136,347 - +0.3 136,347 - -0.4 136,710 + -2.1 136,710 + -1.0 136,710 + -0.0 136,710 + -2.1 136,711 - -1.4 136,711 - -0.8 136,711 - -0.5 136,813 + -0.9 136,813 + -1.2 136,814 - +1.5 136,814 - -0.1 136,814 - -1.7 136,863 + -0.1 136,863 + +0.9 136,863 + -0.7 136,863 + -0.6 136,863 + +0.0 136,863 + -0.0 136,863 + +0.3 136,863 + -0.7 136,863 + -0.5 136,863 + +0.5 136,863 + -0.3 136,864 - -1.1 136,864 - +1.4 136,864 - -1.4 136,864 - -0.1 136,864 - -1.7 136,864 - -0.6 136,864 - -0.7 136,864 - +0.8 136,864 - -0.6 136,864 - -0.7 136,864 - +0.0 136,864 - -1.2 136,864 - -0.7 136,864 - -1.3 136,864 - +0.8 136,864 - -0.3 137,078 + MPMX19_00125 0.27 -0.5 137,079 - MPMX19_00125 0.27 -0.9 137,079 - MPMX19_00125 0.27 -1.3 137,079 - MPMX19_00125 0.27 -0.2 137,079 - MPMX19_00125 0.27 +0.4 137,187 + MPMX19_00125 0.37 +0.9 137,187 + MPMX19_00125 0.37 -1.2 137,187 + MPMX19_00125 0.37 +0.1 137,187 + MPMX19_00125 0.37 -0.7 137,187 + MPMX19_00125 0.37 -2.4 137,187 + MPMX19_00125 0.37 -1.1 137,187 + MPMX19_00125 0.37 -0.6 137,188 - MPMX19_00125 0.37 -0.5 137,188 - MPMX19_00125 0.37 +0.3 137,188 - MPMX19_00125 0.37 -0.7 137,188 - MPMX19_00125 0.37 -1.1 137,188 - MPMX19_00125 0.37 +0.0 137,188 - MPMX19_00125 0.37 -0.7 137,478 + MPMX19_00125 0.65 -1.2 137,478 + MPMX19_00125 0.65 -0.5 137,478 + MPMX19_00125 0.65 -0.4 137,478 + MPMX19_00125 0.65 -1.1 137,478 + MPMX19_00125 0.65 +0.2 137,478 + MPMX19_00125 0.65 -1.2 137,478 + MPMX19_00125 0.65 -0.4 137,478 + MPMX19_00125 0.65 -1.2 137,478 + MPMX19_00125 0.65 -0.4 137,479 - MPMX19_00125 0.65 +0.2 137,479 - MPMX19_00125 0.65 -0.2 137,479 - MPMX19_00125 0.65 -0.4 137,479 - MPMX19_00125 0.65 -0.1 137,479 - MPMX19_00125 0.65 -0.8 137,479 - MPMX19_00125 0.65 -1.2 137,479 - MPMX19_00125 0.65 +0.7 137,479 - MPMX19_00125 0.65 -1.7 137,562 + MPMX19_00125 0.73 -1.4 137,595 + MPMX19_00125 0.76 -0.4 137,595 + MPMX19_00125 0.76 -1.1 137,595 + MPMX19_00125 0.76 +0.8 137,595 + MPMX19_00125 0.76 -1.7 137,596 - MPMX19_00125 0.76 -2.4 137,596 - MPMX19_00125 0.76 -1.0 137,596 - MPMX19_00125 0.76 +1.6 137,596 - MPMX19_00125 0.76 +1.7 137,596 - MPMX19_00125 0.76 -2.2 137,596 - MPMX19_00125 0.76 +0.0 137,613 + MPMX19_00125 0.77 +0.4 137,613 + MPMX19_00125 0.77 +0.3 137,613 + MPMX19_00125 0.77 -0.4 137,613 + MPMX19_00125 0.77 +0.3 137,613 + MPMX19_00125 0.77 +0.1 137,613 + MPMX19_00125 0.77 -0.2 137,613 + MPMX19_00125 0.77 -3.1 137,613 + MPMX19_00125 0.77 -1.3 137,613 + MPMX19_00125 0.77 -0.1 137,614 - MPMX19_00125 0.78 -0.8 137,614 - MPMX19_00125 0.78 -0.6 137,614 - MPMX19_00125 0.78 -0.5 137,614 - MPMX19_00125 0.78 +2.7 137,614 - MPMX19_00125 0.78 -0.7 137,614 - MPMX19_00125 0.78 -0.9 137,614 - MPMX19_00125 0.78 -0.9 137,614 - MPMX19_00125 0.78 +0.9 137,614 - MPMX19_00125 0.78 -1.7 137,614 - MPMX19_00125 0.78 -0.5 137,614 - MPMX19_00125 0.78 -1.5 137,614 - MPMX19_00125 0.78 -1.6 137,614 - MPMX19_00125 0.78 +1.9 137,614 - MPMX19_00125 0.78 -0.5
Or see this region's nucleotide sequence