Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00116

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00115 and MPMX19_00116 are separated by 125 nucleotidesMPMX19_00116 and MPMX19_00117 are separated by 115 nucleotides MPMX19_00115: MPMX19_00115 - hypothetical protein, at 124,045 to 126,819 _00115 MPMX19_00116: MPMX19_00116 - Large-conductance mechanosensitive channel, at 126,945 to 127,418 _00116 MPMX19_00117: MPMX19_00117 - Protein translocase subunit SecA, at 127,534 to 130,269 _00117 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 126.020 kb on + strand, within MPMX19_00115at 126.020 kb on + strand, within MPMX19_00115at 126.020 kb on + strand, within MPMX19_00115at 126.021 kb on - strand, within MPMX19_00115at 126.021 kb on - strand, within MPMX19_00115at 126.035 kb on + strand, within MPMX19_00115at 126.035 kb on + strand, within MPMX19_00115at 126.036 kb on - strand, within MPMX19_00115at 126.036 kb on - strand, within MPMX19_00115at 126.036 kb on - strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.071 kb on + strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.072 kb on - strand, within MPMX19_00115at 126.074 kb on + strand, within MPMX19_00115at 126.074 kb on + strand, within MPMX19_00115at 126.075 kb on - strand, within MPMX19_00115at 126.198 kb on + strand, within MPMX19_00115at 126.305 kb on + strand, within MPMX19_00115at 126.305 kb on + strand, within MPMX19_00115at 126.305 kb on + strand, within MPMX19_00115at 126.305 kb on + strand, within MPMX19_00115at 126.306 kb on - strand, within MPMX19_00115at 126.306 kb on - strand, within MPMX19_00115at 126.306 kb on - strand, within MPMX19_00115at 126.306 kb on - strand, within MPMX19_00115at 126.306 kb on - strand, within MPMX19_00115at 126.306 kb on - strand, within MPMX19_00115at 126.306 kb on - strand, within MPMX19_00115at 126.323 kb on + strand, within MPMX19_00115at 126.323 kb on + strand, within MPMX19_00115at 126.323 kb on + strand, within MPMX19_00115at 126.323 kb on + strand, within MPMX19_00115at 126.324 kb on - strand, within MPMX19_00115at 126.324 kb on - strand, within MPMX19_00115at 126.512 kb on + strand, within MPMX19_00115at 126.512 kb on + strand, within MPMX19_00115at 126.512 kb on + strand, within MPMX19_00115at 126.512 kb on + strand, within MPMX19_00115at 126.512 kb on + strand, within MPMX19_00115at 126.512 kb on + strand, within MPMX19_00115at 126.513 kb on - strand, within MPMX19_00115at 126.513 kb on - strand, within MPMX19_00115at 126.513 kb on - strand, within MPMX19_00115at 126.513 kb on - strand, within MPMX19_00115at 126.513 kb on - strand, within MPMX19_00115at 126.513 kb on - strand, within MPMX19_00115at 126.513 kb on - strand, within MPMX19_00115at 126.521 kb on + strand, within MPMX19_00115at 126.521 kb on + strand, within MPMX19_00115at 126.521 kb on + strand, within MPMX19_00115at 126.521 kb on + strand, within MPMX19_00115at 126.521 kb on + strand, within MPMX19_00115at 126.522 kb on - strand, within MPMX19_00115at 126.843 kb on - strandat 126.843 kb on - strandat 126.843 kb on - strandat 126.843 kb on - strandat 126.855 kb on - strandat 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.180 kb on + strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.181 kb on - strand, within MPMX19_00116at 127.228 kb on + strand, within MPMX19_00116at 127.229 kb on - strand, within MPMX19_00116at 127.229 kb on - strand, within MPMX19_00116at 127.229 kb on - strand, within MPMX19_00116at 127.255 kb on + strand, within MPMX19_00116at 127.255 kb on + strand, within MPMX19_00116at 127.255 kb on + strand, within MPMX19_00116at 127.255 kb on + strand, within MPMX19_00116at 127.255 kb on + strand, within MPMX19_00116at 127.256 kb on - strand, within MPMX19_00116at 127.256 kb on - strand, within MPMX19_00116at 127.478 kb on - strandat 127.478 kb on - strandat 127.478 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
126,020 + MPMX19_00115 0.71 -0.2
126,020 + MPMX19_00115 0.71 +0.1
126,020 + MPMX19_00115 0.71 -0.7
126,021 - MPMX19_00115 0.71 +0.6
126,021 - MPMX19_00115 0.71 +0.5
126,035 + MPMX19_00115 0.72 -0.8
126,035 + MPMX19_00115 0.72 -0.8
126,036 - MPMX19_00115 0.72 -0.3
126,036 - MPMX19_00115 0.72 -0.2
126,036 - MPMX19_00115 0.72 +0.2
126,071 + MPMX19_00115 0.73 +0.3
126,071 + MPMX19_00115 0.73 -0.1
126,071 + MPMX19_00115 0.73 -3.0
126,071 + MPMX19_00115 0.73 +1.9
126,071 + MPMX19_00115 0.73 -0.8
126,071 + MPMX19_00115 0.73 -0.6
126,071 + MPMX19_00115 0.73 +0.5
126,071 + MPMX19_00115 0.73 +0.2
126,071 + MPMX19_00115 0.73 +0.3
126,071 + MPMX19_00115 0.73 -1.2
126,071 + MPMX19_00115 0.73 -1.7
126,071 + MPMX19_00115 0.73 -1.3
126,071 + MPMX19_00115 0.73 -2.4
126,071 + MPMX19_00115 0.73 +0.2
126,071 + MPMX19_00115 0.73 -0.1
126,071 + MPMX19_00115 0.73 -0.6
126,071 + MPMX19_00115 0.73 +0.5
126,071 + MPMX19_00115 0.73 -0.7
126,071 + MPMX19_00115 0.73 -0.7
126,071 + MPMX19_00115 0.73 +0.7
126,071 + MPMX19_00115 0.73 -0.0
126,071 + MPMX19_00115 0.73 -1.0
126,071 + MPMX19_00115 0.73 -1.6
126,071 + MPMX19_00115 0.73 -0.4
126,071 + MPMX19_00115 0.73 +1.9
126,071 + MPMX19_00115 0.73 -0.9
126,071 + MPMX19_00115 0.73 -0.6
126,071 + MPMX19_00115 0.73 -1.1
126,071 + MPMX19_00115 0.73 -0.6
126,071 + MPMX19_00115 0.73 -0.1
126,071 + MPMX19_00115 0.73 +0.9
126,071 + MPMX19_00115 0.73 +0.1
126,071 + MPMX19_00115 0.73 +1.2
126,071 + MPMX19_00115 0.73 -0.1
126,071 + MPMX19_00115 0.73 +0.8
126,071 + MPMX19_00115 0.73 +0.9
126,071 + MPMX19_00115 0.73 -0.7
126,071 + MPMX19_00115 0.73 +0.0
126,071 + MPMX19_00115 0.73 -0.8
126,071 + MPMX19_00115 0.73 -0.6
126,071 + MPMX19_00115 0.73 +0.9
126,071 + MPMX19_00115 0.73 -1.3
126,072 - MPMX19_00115 0.73 +0.2
126,072 - MPMX19_00115 0.73 +0.6
126,072 - MPMX19_00115 0.73 -0.1
126,072 - MPMX19_00115 0.73 -1.0
126,072 - MPMX19_00115 0.73 -0.8
126,072 - MPMX19_00115 0.73 -0.8
126,072 - MPMX19_00115 0.73 -0.4
126,072 - MPMX19_00115 0.73 -1.7
126,072 - MPMX19_00115 0.73 +1.5
126,072 - MPMX19_00115 0.73 -0.2
126,072 - MPMX19_00115 0.73 -1.2
126,072 - MPMX19_00115 0.73 -0.3
126,072 - MPMX19_00115 0.73 +0.6
126,072 - MPMX19_00115 0.73 -1.9
126,072 - MPMX19_00115 0.73 +0.9
126,072 - MPMX19_00115 0.73 +0.6
126,072 - MPMX19_00115 0.73 -0.7
126,072 - MPMX19_00115 0.73 -0.4
126,072 - MPMX19_00115 0.73 -0.5
126,072 - MPMX19_00115 0.73 +0.3
126,072 - MPMX19_00115 0.73 +0.2
126,072 - MPMX19_00115 0.73 +1.9
126,072 - MPMX19_00115 0.73 +0.4
126,072 - MPMX19_00115 0.73 -1.5
126,072 - MPMX19_00115 0.73 -0.2
126,072 - MPMX19_00115 0.73 -0.2
126,072 - MPMX19_00115 0.73 +0.8
126,072 - MPMX19_00115 0.73 -0.7
126,072 - MPMX19_00115 0.73 -0.9
126,072 - MPMX19_00115 0.73 +0.5
126,072 - MPMX19_00115 0.73 -0.7
126,074 + MPMX19_00115 0.73 -1.8
126,074 + MPMX19_00115 0.73 -0.3
126,075 - MPMX19_00115 0.73 +0.3
126,198 + MPMX19_00115 0.78 -1.8
126,305 + MPMX19_00115 0.81 -0.8
126,305 + MPMX19_00115 0.81 -1.9
126,305 + MPMX19_00115 0.81 -1.0
126,305 + MPMX19_00115 0.81 +0.9
126,306 - MPMX19_00115 0.81 -0.4
126,306 - MPMX19_00115 0.81 -1.8
126,306 - MPMX19_00115 0.81 -1.2
126,306 - MPMX19_00115 0.81 +2.2
126,306 - MPMX19_00115 0.81 +0.0
126,306 - MPMX19_00115 0.81 +1.4
126,306 - MPMX19_00115 0.81 +0.4
126,323 + MPMX19_00115 0.82 +0.1
126,323 + MPMX19_00115 0.82 +1.4
126,323 + MPMX19_00115 0.82 +0.0
126,323 + MPMX19_00115 0.82 +0.1
126,324 - MPMX19_00115 0.82 -0.7
126,324 - MPMX19_00115 0.82 -0.7
126,512 + MPMX19_00115 0.89 -1.3
126,512 + MPMX19_00115 0.89 +1.9
126,512 + MPMX19_00115 0.89 -0.8
126,512 + MPMX19_00115 0.89 -0.1
126,512 + MPMX19_00115 0.89 +0.2
126,512 + MPMX19_00115 0.89 -0.2
126,513 - MPMX19_00115 0.89 +1.4
126,513 - MPMX19_00115 0.89 +1.2
126,513 - MPMX19_00115 0.89 +0.9
126,513 - MPMX19_00115 0.89 -0.1
126,513 - MPMX19_00115 0.89 +0.3
126,513 - MPMX19_00115 0.89 -0.1
126,513 - MPMX19_00115 0.89 +0.0
126,521 + MPMX19_00115 0.89 -0.4
126,521 + MPMX19_00115 0.89 -1.7
126,521 + MPMX19_00115 0.89 -0.2
126,521 + MPMX19_00115 0.89 -0.4
126,521 + MPMX19_00115 0.89 -0.1
126,522 - MPMX19_00115 0.89 +0.7
126,843 - +0.9
126,843 - +1.6
126,843 - -0.2
126,843 - -0.9
126,855 - -0.7
127,180 + MPMX19_00116 0.50 -0.4
127,180 + MPMX19_00116 0.50 +1.9
127,180 + MPMX19_00116 0.50 +0.6
127,180 + MPMX19_00116 0.50 -1.4
127,180 + MPMX19_00116 0.50 -0.4
127,180 + MPMX19_00116 0.50 -0.0
127,180 + MPMX19_00116 0.50 -0.2
127,180 + MPMX19_00116 0.50 +0.2
127,181 - MPMX19_00116 0.50 +0.7
127,181 - MPMX19_00116 0.50 -0.1
127,181 - MPMX19_00116 0.50 -0.1
127,181 - MPMX19_00116 0.50 -2.3
127,181 - MPMX19_00116 0.50 -1.1
127,181 - MPMX19_00116 0.50 +0.0
127,228 + MPMX19_00116 0.60 +0.5
127,229 - MPMX19_00116 0.60 +0.2
127,229 - MPMX19_00116 0.60 +0.6
127,229 - MPMX19_00116 0.60 -0.7
127,255 + MPMX19_00116 0.65 +0.4
127,255 + MPMX19_00116 0.65 -0.0
127,255 + MPMX19_00116 0.65 +0.6
127,255 + MPMX19_00116 0.65 -0.5
127,255 + MPMX19_00116 0.65 +0.3
127,256 - MPMX19_00116 0.66 -1.0
127,256 - MPMX19_00116 0.66 -1.0
127,478 - -0.5
127,478 - +1.4
127,478 - -1.0

Or see this region's nucleotide sequence