Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00009 and MPMX19_00010 are separated by 242 nucleotides MPMX19_00010 and MPMX19_00011 overlap by 4 nucleotides MPMX19_00011 and MPMX19_00012 are separated by 170 nucleotides
MPMX19_00009: MPMX19_00009 - hypothetical protein, at 9,943 to 10,536
_00009
MPMX19_00010: MPMX19_00010 - Transcriptional regulatory protein OmpR, at 10,779 to 11,522
_00010
MPMX19_00011: MPMX19_00011 - Adaptive-response sensory-kinase SasA, at 11,519 to 13,003
_00011
MPMX19_00012: MPMX19_00012 - Biosynthetic peptidoglycan transglycosylase, at 13,174 to 15,621
_00012
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 10.568 kb on + strand at 10.568 kb on + strand at 10.568 kb on + strand at 10.568 kb on + strand at 10.568 kb on + strand at 10.569 kb on - strand at 10.569 kb on - strand at 10.569 kb on - strand at 10.569 kb on - strand at 10.569 kb on - strand at 10.569 kb on - strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.693 kb on - strand at 10.702 kb on + strand at 10.702 kb on + strand at 10.702 kb on + strand at 10.702 kb on + strand at 10.702 kb on + strand at 10.703 kb on - strand at 10.703 kb on - strand at 10.731 kb on + strand at 10.731 kb on + strand at 10.731 kb on + strand at 10.731 kb on + strand at 10.731 kb on + strand at 10.732 kb on - strand at 10.732 kb on - strand at 10.732 kb on - strand at 10.732 kb on - strand at 11.088 kb on + strand, within MPMX19_00010 at 11.088 kb on + strand, within MPMX19_00010 at 11.088 kb on + strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.286 kb on + strand, within MPMX19_00010 at 11.286 kb on + strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.478 kb on + strand at 11.478 kb on + strand at 11.478 kb on + strand at 11.479 kb on - strand at 11.479 kb on - strand at 11.696 kb on + strand, within MPMX19_00011 at 11.696 kb on + strand, within MPMX19_00011 at 11.697 kb on - strand, within MPMX19_00011 at 11.888 kb on + strand, within MPMX19_00011 at 11.888 kb on + strand, within MPMX19_00011 at 11.889 kb on - strand, within MPMX19_00011 at 11.889 kb on - strand, within MPMX19_00011 at 11.889 kb on - strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.630 kb on - strand, within MPMX19_00011 at 12.630 kb on - strand, within MPMX19_00011 at 12.646 kb on + strand, within MPMX19_00011 at 12.646 kb on + strand, within MPMX19_00011 at 12.646 kb on + strand, within MPMX19_00011 at 12.646 kb on + strand, within MPMX19_00011 at 12.646 kb on + strand, within MPMX19_00011 at 12.647 kb on - strand, within MPMX19_00011 at 12.647 kb on - strand, within MPMX19_00011 at 12.647 kb on - strand, within MPMX19_00011 at 12.716 kb on + strand, within MPMX19_00011 at 12.716 kb on + strand, within MPMX19_00011 at 12.716 kb on + strand, within MPMX19_00011 at 12.716 kb on + strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.851 kb on + strand, within MPMX19_00011 at 12.851 kb on + strand, within MPMX19_00011 at 12.851 kb on + strand, within MPMX19_00011 at 12.851 kb on + strand, within MPMX19_00011 at 12.851 kb on + strand, within MPMX19_00011 at 12.852 kb on - strand, within MPMX19_00011 at 12.852 kb on - strand, within MPMX19_00011 at 12.852 kb on - strand, within MPMX19_00011 at 13.026 kb on + strand at 13.026 kb on + strand at 13.027 kb on - strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.061 kb on - strand at 13.061 kb on - strand at 13.061 kb on - strand at 13.061 kb on - strand at 13.061 kb on - strand at 13.105 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.107 kb on - strand at 13.107 kb on - strand at 13.107 kb on - strand at 13.107 kb on - strand at 13.107 kb on - strand at 13.107 kb on - strand at 13.234 kb on + strand at 13.234 kb on + strand at 13.235 kb on - strand at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.912 kb on + strand, within MPMX19_00012 at 13.912 kb on + strand, within MPMX19_00012 at 13.912 kb on + strand, within MPMX19_00012 at 13.912 kb on + strand, within MPMX19_00012 at 13.912 kb on + strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.957 kb on + strand, within MPMX19_00012 at 13.957 kb on + strand, within MPMX19_00012 at 13.957 kb on + strand, within MPMX19_00012 at 13.957 kb on + strand, within MPMX19_00012 at 13.958 kb on - strand, within MPMX19_00012 at 13.958 kb on - strand, within MPMX19_00012 at 13.958 kb on - strand, within MPMX19_00012 at 13.958 kb on - strand, within MPMX19_00012 at 13.958 kb on - strand, within MPMX19_00012
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 10,568 + -0.9 10,568 + +0.0 10,568 + -0.6 10,568 + +0.6 10,568 + -1.0 10,569 - -1.3 10,569 - -0.9 10,569 - +0.1 10,569 - +0.3 10,569 - -1.1 10,569 - +0.6 10,590 + -0.2 10,590 + +1.0 10,590 + +1.9 10,590 + +0.1 10,590 + -0.3 10,590 + +2.3 10,590 + -0.7 10,590 + -0.9 10,590 + -1.0 10,590 + -0.1 10,590 + +0.9 10,591 - +0.5 10,591 - -0.3 10,591 - +0.4 10,591 - -0.6 10,591 - +0.0 10,591 - -0.8 10,591 - -0.8 10,591 - -2.3 10,591 - -0.2 10,591 - +1.1 10,591 - -0.5 10,591 - -2.0 10,591 - -0.0 10,591 - +0.1 10,591 - +0.9 10,591 - +0.9 10,693 - +0.4 10,702 + -0.0 10,702 + +1.5 10,702 + -3.0 10,702 + -0.4 10,702 + +0.1 10,703 - -0.4 10,703 - -1.1 10,731 + -1.3 10,731 + -0.4 10,731 + -1.8 10,731 + -1.3 10,731 + +0.1 10,732 - -0.0 10,732 - -1.8 10,732 - -1.9 10,732 - -0.7 11,088 + MPMX19_00010 0.42 -1.0 11,088 + MPMX19_00010 0.42 +1.3 11,088 + MPMX19_00010 0.42 -0.2 11,089 - MPMX19_00010 0.42 +1.7 11,089 - MPMX19_00010 0.42 +0.5 11,089 - MPMX19_00010 0.42 -0.7 11,089 - MPMX19_00010 0.42 -0.1 11,089 - MPMX19_00010 0.42 -0.2 11,089 - MPMX19_00010 0.42 -0.7 11,286 + MPMX19_00010 0.68 -0.9 11,286 + MPMX19_00010 0.68 -1.4 11,287 - MPMX19_00010 0.68 -0.3 11,287 - MPMX19_00010 0.68 -0.6 11,287 - MPMX19_00010 0.68 +0.1 11,287 - MPMX19_00010 0.68 +0.3 11,287 - MPMX19_00010 0.68 +0.2 11,287 - MPMX19_00010 0.68 -0.7 11,287 - MPMX19_00010 0.68 +0.6 11,478 + -0.3 11,478 + -0.9 11,478 + -0.5 11,479 - -2.5 11,479 - +0.0 11,696 + MPMX19_00011 0.12 +0.3 11,696 + MPMX19_00011 0.12 -0.9 11,697 - MPMX19_00011 0.12 -0.4 11,888 + MPMX19_00011 0.25 +0.2 11,888 + MPMX19_00011 0.25 -1.0 11,889 - MPMX19_00011 0.25 -0.4 11,889 - MPMX19_00011 0.25 +0.3 11,889 - MPMX19_00011 0.25 -0.7 12,629 + MPMX19_00011 0.75 -1.4 12,629 + MPMX19_00011 0.75 -1.0 12,629 + MPMX19_00011 0.75 +1.3 12,629 + MPMX19_00011 0.75 +0.5 12,629 + MPMX19_00011 0.75 +1.9 12,629 + MPMX19_00011 0.75 -1.0 12,630 - MPMX19_00011 0.75 -1.1 12,630 - MPMX19_00011 0.75 -0.6 12,646 + MPMX19_00011 0.76 -0.4 12,646 + MPMX19_00011 0.76 -0.4 12,646 + MPMX19_00011 0.76 -1.3 12,646 + MPMX19_00011 0.76 -1.8 12,646 + MPMX19_00011 0.76 -0.1 12,647 - MPMX19_00011 0.76 -0.4 12,647 - MPMX19_00011 0.76 -1.7 12,647 - MPMX19_00011 0.76 +0.3 12,716 + MPMX19_00011 0.81 -0.1 12,716 + MPMX19_00011 0.81 -1.6 12,716 + MPMX19_00011 0.81 +1.0 12,716 + MPMX19_00011 0.81 +0.1 12,717 - MPMX19_00011 0.81 -0.0 12,717 - MPMX19_00011 0.81 -0.4 12,717 - MPMX19_00011 0.81 -0.2 12,717 - MPMX19_00011 0.81 +0.6 12,717 - MPMX19_00011 0.81 +0.5 12,717 - MPMX19_00011 0.81 -0.4 12,851 + MPMX19_00011 0.90 -2.0 12,851 + MPMX19_00011 0.90 -0.3 12,851 + MPMX19_00011 0.90 +0.3 12,851 + MPMX19_00011 0.90 +0.2 12,851 + MPMX19_00011 0.90 +0.9 12,852 - MPMX19_00011 0.90 -2.7 12,852 - MPMX19_00011 0.90 -1.0 12,852 - MPMX19_00011 0.90 -0.1 13,026 + +0.7 13,026 + -0.7 13,027 - +1.5 13,060 + -0.3 13,060 + +0.0 13,060 + -1.4 13,060 + -0.9 13,060 + +0.6 13,060 + +0.3 13,060 + -0.7 13,060 + +0.0 13,061 - -0.5 13,061 - -0.1 13,061 - -1.1 13,061 - -0.4 13,061 - -0.4 13,105 + -0.0 13,106 + -1.6 13,106 + -0.1 13,106 + +0.3 13,106 + -0.4 13,106 + -0.7 13,106 + -1.3 13,106 + -0.4 13,106 + -0.9 13,106 + -0.5 13,106 + +0.0 13,106 + -1.3 13,106 + -0.5 13,106 + -0.1 13,107 - -1.4 13,107 - -2.4 13,107 - +0.0 13,107 - -1.7 13,107 - +0.5 13,107 - +0.8 13,234 + -0.1 13,234 + -0.7 13,235 - -0.9 13,423 + MPMX19_00012 0.10 -2.6 13,423 + MPMX19_00012 0.10 -0.3 13,423 + MPMX19_00012 0.10 -1.5 13,423 + MPMX19_00012 0.10 +0.7 13,423 + MPMX19_00012 0.10 -0.8 13,423 + MPMX19_00012 0.10 +0.0 13,423 + MPMX19_00012 0.10 -0.4 13,423 + MPMX19_00012 0.10 +0.3 13,423 + MPMX19_00012 0.10 +0.5 13,423 + MPMX19_00012 0.10 -1.1 13,423 + MPMX19_00012 0.10 +0.6 13,424 - MPMX19_00012 0.10 -0.1 13,424 - MPMX19_00012 0.10 -0.7 13,424 - MPMX19_00012 0.10 +0.3 13,424 - MPMX19_00012 0.10 -0.1 13,424 - MPMX19_00012 0.10 -0.4 13,424 - MPMX19_00012 0.10 -0.6 13,424 - MPMX19_00012 0.10 -0.9 13,424 - MPMX19_00012 0.10 +0.8 13,424 - MPMX19_00012 0.10 -1.5 13,458 + MPMX19_00012 0.12 -0.6 13,458 + MPMX19_00012 0.12 -0.1 13,458 + MPMX19_00012 0.12 -0.7 13,458 + MPMX19_00012 0.12 -0.0 13,458 + MPMX19_00012 0.12 -0.5 13,458 + MPMX19_00012 0.12 -0.3 13,458 + MPMX19_00012 0.12 -0.3 13,458 + MPMX19_00012 0.12 -0.1 13,458 + MPMX19_00012 0.12 +0.2 13,458 + MPMX19_00012 0.12 +0.8 13,458 + MPMX19_00012 0.12 +0.3 13,458 + MPMX19_00012 0.12 -0.1 13,458 + MPMX19_00012 0.12 +0.1 13,458 + MPMX19_00012 0.12 -0.3 13,458 + MPMX19_00012 0.12 -0.0 13,458 + MPMX19_00012 0.12 -0.2 13,459 - MPMX19_00012 0.12 -2.4 13,459 - MPMX19_00012 0.12 +0.6 13,459 - MPMX19_00012 0.12 -0.9 13,459 - MPMX19_00012 0.12 +1.5 13,459 - MPMX19_00012 0.12 -1.2 13,459 - MPMX19_00012 0.12 -0.8 13,459 - MPMX19_00012 0.12 -0.2 13,459 - MPMX19_00012 0.12 -2.1 13,459 - MPMX19_00012 0.12 -0.3 13,459 - MPMX19_00012 0.12 -0.7 13,459 - MPMX19_00012 0.12 -1.3 13,459 - MPMX19_00012 0.12 +0.6 13,459 - MPMX19_00012 0.12 -0.7 13,459 - MPMX19_00012 0.12 +0.0 13,459 - MPMX19_00012 0.12 +0.3 13,912 + MPMX19_00012 0.30 -1.1 13,912 + MPMX19_00012 0.30 -1.6 13,912 + MPMX19_00012 0.30 -0.0 13,912 + MPMX19_00012 0.30 -0.4 13,912 + MPMX19_00012 0.30 -0.2 13,913 - MPMX19_00012 0.30 -0.8 13,913 - MPMX19_00012 0.30 -0.7 13,913 - MPMX19_00012 0.30 +0.0 13,913 - MPMX19_00012 0.30 -0.6 13,913 - MPMX19_00012 0.30 +0.9 13,913 - MPMX19_00012 0.30 -0.3 13,957 + MPMX19_00012 0.32 +0.6 13,957 + MPMX19_00012 0.32 -2.3 13,957 + MPMX19_00012 0.32 -0.4 13,957 + MPMX19_00012 0.32 +0.6 13,958 - MPMX19_00012 0.32 -0.3 13,958 - MPMX19_00012 0.32 +0.5 13,958 - MPMX19_00012 0.32 -2.4 13,958 - MPMX19_00012 0.32 -2.5 13,958 - MPMX19_00012 0.32 +1.0
Or see this region's nucleotide sequence