Strain Fitness in Pseudomonas sp. DMC3 around GFF841

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF838 and GFF839 overlap by 4 nucleotidesGFF839 and GFF840 overlap by 8 nucleotidesGFF840 and GFF841 overlap by 4 nucleotidesGFF841 and GFF842 overlap by 4 nucleotides GFF838 - hypothetical protein, at 187,600 to 188,397 GFF838 GFF839 - hypothetical protein, at 188,394 to 188,852 GFF839 GFF840 - hypothetical protein, at 188,845 to 189,315 GFF840 GFF841 - hypothetical protein, at 189,312 to 189,917 GFF841 GFF842 - hypothetical protein, at 189,914 to 190,495 GFF842 Position (kb) 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 188.399 kb on + strandat 188.665 kb on + strand, within GFF839at 188.695 kb on + strand, within GFF839at 188.695 kb on + strand, within GFF839at 188.695 kb on + strand, within GFF839at 188.696 kb on - strand, within GFF839at 188.696 kb on - strand, within GFF839at 188.696 kb on - strand, within GFF839at 188.714 kb on + strand, within GFF839at 188.727 kb on - strand, within GFF839at 188.999 kb on - strand, within GFF840at 189.238 kb on + strand, within GFF840at 189.238 kb on + strand, within GFF840at 189.239 kb on - strand, within GFF840at 189.239 kb on - strand, within GFF840at 189.280 kb on + strandat 189.561 kb on + strand, within GFF841at 189.837 kb on + strand, within GFF841at 189.956 kb on + strandat 189.957 kb on - strandat 190.127 kb on + strand, within GFF842at 190.128 kb on - strand, within GFF842at 190.128 kb on - strand, within GFF842at 190.128 kb on - strand, within GFF842at 190.176 kb on + strand, within GFF842at 190.177 kb on - strand, within GFF842at 190.182 kb on + strand, within GFF842at 190.183 kb on - strand, within GFF842at 190.195 kb on + strand, within GFF842at 190.195 kb on + strand, within GFF842at 190.196 kb on - strand, within GFF842at 190.196 kb on - strand, within GFF842at 190.238 kb on + strand, within GFF842at 190.238 kb on + strand, within GFF842at 190.239 kb on - strand, within GFF842at 190.239 kb on - strand, within GFF842at 190.239 kb on - strand, within GFF842at 190.239 kb on - strand, within GFF842at 190.245 kb on + strand, within GFF842at 190.246 kb on - strand, within GFF842at 190.271 kb on + strand, within GFF842at 190.272 kb on - strand, within GFF842at 190.272 kb on - strand, within GFF842at 190.352 kb on + strand, within GFF842at 190.352 kb on + strand, within GFF842at 190.352 kb on + strand, within GFF842at 190.353 kb on - strand, within GFF842at 190.470 kb on + strandat 190.470 kb on + strandat 190.470 kb on + strandat 190.471 kb on - strandat 190.471 kb on - strandat 190.471 kb on - strandat 190.472 kb on + strandat 190.472 kb on + strandat 190.472 kb on + strandat 190.473 kb on - strandat 190.473 kb on - strandat 190.473 kb on - strandat 190.473 kb on - strandat 190.502 kb on - strandat 190.502 kb on - strandat 190.565 kb on + strandat 190.684 kb on - strandat 190.684 kb on - strandat 190.684 kb on - strandat 190.726 kb on + strandat 190.726 kb on + strandat 190.726 kb on + strandat 190.727 kb on - strandat 190.778 kb on + strandat 190.779 kb on - strandat 190.779 kb on - strandat 190.785 kb on + strandat 190.809 kb on + strandat 190.821 kb on - strandat 190.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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188,399 + +0.3
188,665 + GFF839 0.59 +0.4
188,695 + GFF839 0.66 -0.4
188,695 + GFF839 0.66 +0.6
188,695 + GFF839 0.66 -1.5
188,696 - GFF839 0.66 -0.6
188,696 - GFF839 0.66 +0.8
188,696 - GFF839 0.66 -1.7
188,714 + GFF839 0.70 -0.0
188,727 - GFF839 0.73 +0.8
188,999 - GFF840 0.33 +0.4
189,238 + GFF840 0.83 +0.2
189,238 + GFF840 0.83 +0.3
189,239 - GFF840 0.84 +0.3
189,239 - GFF840 0.84 -0.0
189,280 + +0.3
189,561 + GFF841 0.41 +0.1
189,837 + GFF841 0.87 -0.2
189,956 + +1.7
189,957 - -0.2
190,127 + GFF842 0.37 +0.6
190,128 - GFF842 0.37 +0.0
190,128 - GFF842 0.37 -1.2
190,128 - GFF842 0.37 +0.3
190,176 + GFF842 0.45 +0.8
190,177 - GFF842 0.45 -2.4
190,182 + GFF842 0.46 +1.4
190,183 - GFF842 0.46 +0.3
190,195 + GFF842 0.48 -0.2
190,195 + GFF842 0.48 +0.4
190,196 - GFF842 0.48 +0.1
190,196 - GFF842 0.48 +1.0
190,238 + GFF842 0.56 -0.0
190,238 + GFF842 0.56 +2.0
190,239 - GFF842 0.56 +0.1
190,239 - GFF842 0.56 -0.0
190,239 - GFF842 0.56 -1.1
190,239 - GFF842 0.56 +0.4
190,245 + GFF842 0.57 +0.2
190,246 - GFF842 0.57 +0.2
190,271 + GFF842 0.61 +0.4
190,272 - GFF842 0.62 +0.6
190,272 - GFF842 0.62 +0.9
190,352 + GFF842 0.75 +1.4
190,352 + GFF842 0.75 -0.6
190,352 + GFF842 0.75 -0.4
190,353 - GFF842 0.75 -0.0
190,470 + -0.7
190,470 + -0.0
190,470 + -1.5
190,471 - +0.0
190,471 - +0.5
190,471 - +0.2
190,472 + +0.7
190,472 + +0.7
190,472 + +0.7
190,473 - +1.1
190,473 - +0.0
190,473 - -1.5
190,473 - -1.3
190,502 - -0.4
190,502 - -0.4
190,565 + +0.3
190,684 - -0.8
190,684 - +0.5
190,684 - +0.4
190,726 + -0.8
190,726 + +1.6
190,726 + -0.6
190,727 - -0.5
190,778 + -0.7
190,779 - -1.2
190,779 - -1.6
190,785 + -0.2
190,809 + +0.2
190,821 - +0.4
190,864 - +2.5

Or see this region's nucleotide sequence