Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF587 and GFF588 are separated by 57 nucleotides GFF588 and GFF589 are separated by 132 nucleotides GFF589 and GFF590 are separated by 21 nucleotides
GFF587 - Lipid A biosynthesis palmitoleoyltransferase, at 654,670 to 655,557
GFF587
GFF588 - hypothetical protein, at 655,615 to 655,929
GFF588
GFF589 - Trk system potassium uptake protein TrkA, at 656,062 to 657,438
GFF589
GFF590 - Ribosomal RNA small subunit methyltransferase B, at 657,460 to 658,770
GFF590
Position (kb) 656
657
658 Strain fitness (log2 ratio) -2
-1
0
1 at 655.420 kb on + strand, within GFF587 at 655.420 kb on + strand, within GFF587 at 655.420 kb on + strand, within GFF587 at 655.420 kb on + strand, within GFF587 at 655.421 kb on - strand, within GFF587 at 655.421 kb on - strand, within GFF587 at 655.463 kb on + strand, within GFF587 at 655.464 kb on - strand, within GFF587 at 655.474 kb on + strand at 655.474 kb on + strand at 655.474 kb on + strand at 655.475 kb on - strand at 655.475 kb on - strand at 655.475 kb on - strand at 655.487 kb on - strand at 655.498 kb on + strand at 655.498 kb on + strand at 655.498 kb on + strand at 655.498 kb on + strand at 655.498 kb on + strand at 655.498 kb on + strand at 655.498 kb on + strand at 655.498 kb on + strand at 655.498 kb on + strand at 655.498 kb on + strand at 655.499 kb on - strand at 655.499 kb on - strand at 655.499 kb on - strand at 655.499 kb on - strand at 655.499 kb on - strand at 655.499 kb on - strand at 655.499 kb on - strand at 655.499 kb on - strand at 655.499 kb on - strand at 655.499 kb on - strand at 655.499 kb on - strand at 655.784 kb on + strand, within GFF588 at 655.785 kb on - strand, within GFF588 at 655.785 kb on - strand, within GFF588 at 655.853 kb on + strand, within GFF588 at 655.854 kb on - strand, within GFF588 at 655.854 kb on - strand, within GFF588 at 656.109 kb on + strand at 656.109 kb on + strand at 656.109 kb on + strand at 656.405 kb on + strand, within GFF589 at 656.435 kb on + strand, within GFF589 at 656.435 kb on + strand, within GFF589 at 656.436 kb on - strand, within GFF589 at 656.541 kb on + strand, within GFF589 at 656.605 kb on + strand, within GFF589 at 656.744 kb on + strand, within GFF589 at 656.744 kb on + strand, within GFF589 at 656.744 kb on + strand, within GFF589 at 656.745 kb on - strand, within GFF589 at 656.745 kb on - strand, within GFF589 at 656.957 kb on + strand, within GFF589 at 656.957 kb on + strand, within GFF589 at 656.957 kb on + strand, within GFF589 at 656.958 kb on - strand, within GFF589 at 657.044 kb on + strand, within GFF589 at 657.044 kb on + strand, within GFF589 at 657.044 kb on + strand, within GFF589 at 657.045 kb on - strand, within GFF589 at 657.045 kb on - strand, within GFF589 at 657.045 kb on - strand, within GFF589 at 657.045 kb on - strand, within GFF589 at 657.045 kb on - strand, within GFF589 at 657.128 kb on + strand, within GFF589 at 657.128 kb on + strand, within GFF589 at 657.128 kb on + strand, within GFF589 at 657.129 kb on - strand, within GFF589 at 657.129 kb on - strand, within GFF589 at 657.497 kb on + strand at 657.497 kb on + strand at 657.500 kb on + strand at 657.500 kb on + strand at 657.501 kb on - strand at 658.169 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.218 kb on - strand, within GFF590
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 655,420 + GFF587 0.84 +0.9 655,420 + GFF587 0.84 -1.1 655,420 + GFF587 0.84 +0.5 655,420 + GFF587 0.84 +1.2 655,421 - GFF587 0.85 -0.1 655,421 - GFF587 0.85 -0.1 655,463 + GFF587 0.89 +0.1 655,464 - GFF587 0.89 +0.7 655,474 + -0.7 655,474 + +0.4 655,474 + +0.2 655,475 - -0.3 655,475 - -0.5 655,475 - -0.5 655,487 - -1.4 655,498 + +0.5 655,498 + -0.5 655,498 + -1.9 655,498 + +0.5 655,498 + -0.3 655,498 + -0.0 655,498 + -0.2 655,498 + +0.3 655,498 + -1.1 655,498 + -1.9 655,499 - -0.7 655,499 - +0.8 655,499 - +0.2 655,499 - -0.7 655,499 - +0.3 655,499 - -1.8 655,499 - +0.4 655,499 - +1.3 655,499 - +1.2 655,499 - +0.1 655,499 - -0.8 655,784 + GFF588 0.54 -0.7 655,785 - GFF588 0.54 +0.4 655,785 - GFF588 0.54 -0.2 655,853 + GFF588 0.76 +0.6 655,854 - GFF588 0.76 -0.1 655,854 - GFF588 0.76 -0.2 656,109 + -0.0 656,109 + -1.5 656,109 + -0.5 656,405 + GFF589 0.25 -0.9 656,435 + GFF589 0.27 +0.2 656,435 + GFF589 0.27 +0.7 656,436 - GFF589 0.27 -0.5 656,541 + GFF589 0.35 -0.5 656,605 + GFF589 0.39 +0.7 656,744 + GFF589 0.50 -2.5 656,744 + GFF589 0.50 -1.2 656,744 + GFF589 0.50 -0.3 656,745 - GFF589 0.50 -1.0 656,745 - GFF589 0.50 +0.9 656,957 + GFF589 0.65 +0.4 656,957 + GFF589 0.65 +0.2 656,957 + GFF589 0.65 -0.3 656,958 - GFF589 0.65 -1.0 657,044 + GFF589 0.71 -0.8 657,044 + GFF589 0.71 +1.4 657,044 + GFF589 0.71 -0.5 657,045 - GFF589 0.71 -1.3 657,045 - GFF589 0.71 -1.2 657,045 - GFF589 0.71 -0.9 657,045 - GFF589 0.71 -1.9 657,045 - GFF589 0.71 -0.6 657,128 + GFF589 0.77 -0.2 657,128 + GFF589 0.77 -0.7 657,128 + GFF589 0.77 +1.2 657,129 - GFF589 0.77 +0.1 657,129 - GFF589 0.77 -0.2 657,497 + -0.7 657,497 + -1.1 657,500 + -0.6 657,500 + -0.3 657,501 - -0.7 658,169 + GFF590 0.54 -0.3 658,217 + GFF590 0.58 -0.5 658,217 + GFF590 0.58 +0.9 658,217 + GFF590 0.58 -0.0 658,217 + GFF590 0.58 -0.3 658,217 + GFF590 0.58 +0.2 658,217 + GFF590 0.58 -0.8 658,218 - GFF590 0.58 +0.7
Or see this region's nucleotide sequence