Strain Fitness in Pseudomonas sp. DMC3 around GFF2442

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2440 and GFF2441 are separated by 73 nucleotidesGFF2441 and GFF2442 are separated by 82 nucleotidesGFF2442 and GFF2443 are separated by 129 nucleotidesGFF2443 and GFF2444 are separated by 11 nucleotides GFF2440 - Flagellin, at 229,892 to 230,752 GFF2440 GFF2441 - hypothetical protein, at 230,826 to 231,182 GFF2441 GFF2442 - B-type flagellar hook-associated protein 2, at 231,265 to 232,719 GFF2442 GFF2443 - Flagellar secretion chaperone FliS, at 232,849 to 233,247 GFF2443 GFF2444 - hypothetical protein, at 233,259 to 233,555 GFF2444 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2at 230.278 kb on + strand, within GFF2440at 230.278 kb on + strand, within GFF2440at 230.279 kb on - strand, within GFF2440at 230.279 kb on - strand, within GFF2440at 230.320 kb on + strand, within GFF2440at 230.321 kb on - strand, within GFF2440at 230.321 kb on - strand, within GFF2440at 230.376 kb on + strand, within GFF2440at 230.377 kb on - strand, within GFF2440at 230.412 kb on + strand, within GFF2440at 230.412 kb on + strand, within GFF2440at 230.413 kb on - strand, within GFF2440at 230.413 kb on - strand, within GFF2440at 230.422 kb on + strand, within GFF2440at 230.422 kb on + strand, within GFF2440at 230.422 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.440 kb on + strand, within GFF2440at 230.440 kb on + strand, within GFF2440at 230.625 kb on + strand, within GFF2440at 230.626 kb on - strand, within GFF2440at 230.701 kb on - strandat 230.733 kb on + strandat 230.750 kb on + strandat 230.751 kb on - strandat 230.761 kb on + strandat 230.762 kb on - strandat 230.768 kb on - strandat 230.768 kb on - strandat 230.811 kb on + strandat 230.839 kb on + strandat 230.839 kb on + strandat 230.846 kb on + strandat 230.847 kb on - strandat 230.847 kb on - strandat 230.847 kb on - strandat 230.910 kb on - strand, within GFF2441at 230.910 kb on - strand, within GFF2441at 230.992 kb on + strand, within GFF2441at 230.992 kb on + strand, within GFF2441at 230.993 kb on - strand, within GFF2441at 230.993 kb on - strand, within GFF2441at 231.020 kb on + strand, within GFF2441at 231.020 kb on + strand, within GFF2441at 231.021 kb on - strand, within GFF2441at 231.021 kb on - strand, within GFF2441at 231.021 kb on - strand, within GFF2441at 231.125 kb on + strand, within GFF2441at 231.125 kb on + strand, within GFF2441at 231.126 kb on - strand, within GFF2441at 231.183 kb on + strandat 231.196 kb on + strandat 231.197 kb on - strandat 231.224 kb on + strandat 231.281 kb on + strandat 231.375 kb on + strandat 231.381 kb on + strandat 231.382 kb on - strandat 231.382 kb on - strandat 231.382 kb on - strandat 231.382 kb on - strandat 231.382 kb on - strandat 231.565 kb on + strand, within GFF2442at 231.565 kb on + strand, within GFF2442at 231.565 kb on + strand, within GFF2442at 231.566 kb on - strand, within GFF2442at 231.566 kb on - strand, within GFF2442at 231.566 kb on - strand, within GFF2442at 231.566 kb on - strand, within GFF2442at 231.685 kb on + strand, within GFF2442at 231.685 kb on + strand, within GFF2442at 231.685 kb on + strand, within GFF2442at 231.685 kb on + strand, within GFF2442at 231.685 kb on + strand, within GFF2442at 231.686 kb on - strand, within GFF2442at 231.686 kb on - strand, within GFF2442at 231.858 kb on + strand, within GFF2442at 231.882 kb on + strand, within GFF2442at 232.086 kb on + strand, within GFF2442at 232.086 kb on + strand, within GFF2442at 232.087 kb on - strand, within GFF2442at 232.129 kb on + strand, within GFF2442at 232.129 kb on + strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.146 kb on + strand, within GFF2442at 232.146 kb on + strand, within GFF2442at 232.471 kb on + strand, within GFF2442at 232.556 kb on + strand, within GFF2442at 232.556 kb on + strand, within GFF2442at 232.557 kb on - strand, within GFF2442at 232.621 kb on + strandat 232.717 kb on + strandat 232.717 kb on + strandat 232.718 kb on - strandat 232.809 kb on + strandat 232.820 kb on + strandat 232.820 kb on + strandat 232.821 kb on - strandat 232.821 kb on - strandat 232.844 kb on - strandat 232.844 kb on - strandat 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.111 kb on - strand, within GFF2443at 233.111 kb on - strand, within GFF2443at 233.111 kb on - strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.198 kb on + strand, within GFF2443at 233.269 kb on + strandat 233.269 kb on + strandat 233.269 kb on + strandat 233.270 kb on - strandat 233.270 kb on - strandat 233.270 kb on - strandat 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.445 kb on + strand, within GFF2444at 233.538 kb on + strandat 233.568 kb on + strandat 233.618 kb on - strandat 233.622 kb on - strandat 233.622 kb on - strandat 233.629 kb on - strandat 233.629 kb on - strandat 233.629 kb on - strandat 233.631 kb on + strandat 233.632 kb on - strandat 233.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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230,278 + GFF2440 0.45 +0.9
230,278 + GFF2440 0.45 -0.0
230,279 - GFF2440 0.45 -0.2
230,279 - GFF2440 0.45 +0.4
230,320 + GFF2440 0.50 -0.3
230,321 - GFF2440 0.50 +0.7
230,321 - GFF2440 0.50 +0.1
230,376 + GFF2440 0.56 +0.1
230,377 - GFF2440 0.56 -1.1
230,412 + GFF2440 0.60 +0.2
230,412 + GFF2440 0.60 +0.3
230,413 - GFF2440 0.61 -0.5
230,413 - GFF2440 0.61 +0.5
230,422 + GFF2440 0.62 -0.2
230,422 + GFF2440 0.62 +1.0
230,422 + GFF2440 0.62 -0.5
230,427 + GFF2440 0.62 +1.5
230,427 + GFF2440 0.62 +0.3
230,427 + GFF2440 0.62 -0.2
230,427 + GFF2440 0.62 +0.2
230,428 - GFF2440 0.62 -1.1
230,428 - GFF2440 0.62 -0.6
230,428 - GFF2440 0.62 -0.1
230,428 - GFF2440 0.62 +0.5
230,428 - GFF2440 0.62 +1.3
230,440 + GFF2440 0.64 +2.3
230,440 + GFF2440 0.64 +0.5
230,625 + GFF2440 0.85 -0.1
230,626 - GFF2440 0.85 -0.6
230,701 - +0.8
230,733 + -0.0
230,750 + +0.3
230,751 - +0.2
230,761 + +0.7
230,762 - -0.5
230,768 - -0.5
230,768 - -0.0
230,811 + -0.3
230,839 + -0.3
230,839 + +0.5
230,846 + +0.4
230,847 - -1.2
230,847 - +0.9
230,847 - +0.1
230,910 - GFF2441 0.24 -0.2
230,910 - GFF2441 0.24 +0.2
230,992 + GFF2441 0.46 -0.5
230,992 + GFF2441 0.46 +1.1
230,993 - GFF2441 0.47 -0.3
230,993 - GFF2441 0.47 -2.1
231,020 + GFF2441 0.54 -0.8
231,020 + GFF2441 0.54 -0.5
231,021 - GFF2441 0.55 +0.9
231,021 - GFF2441 0.55 -0.6
231,021 - GFF2441 0.55 -0.3
231,125 + GFF2441 0.84 -1.1
231,125 + GFF2441 0.84 +0.9
231,126 - GFF2441 0.84 -1.1
231,183 + -0.3
231,196 + -0.8
231,197 - +0.8
231,224 + -0.2
231,281 + -0.6
231,375 + -0.4
231,381 + +0.4
231,382 - +0.4
231,382 - +1.5
231,382 - -0.8
231,382 - +0.1
231,382 - -0.2
231,565 + GFF2442 0.21 +0.2
231,565 + GFF2442 0.21 +1.1
231,565 + GFF2442 0.21 -1.4
231,566 - GFF2442 0.21 +1.3
231,566 - GFF2442 0.21 -0.3
231,566 - GFF2442 0.21 -1.6
231,566 - GFF2442 0.21 +0.3
231,685 + GFF2442 0.29 +0.1
231,685 + GFF2442 0.29 -0.1
231,685 + GFF2442 0.29 -0.1
231,685 + GFF2442 0.29 +0.3
231,685 + GFF2442 0.29 +0.3
231,686 - GFF2442 0.29 +0.7
231,686 - GFF2442 0.29 +1.9
231,858 + GFF2442 0.41 -1.1
231,882 + GFF2442 0.42 +0.5
232,086 + GFF2442 0.56 +0.8
232,086 + GFF2442 0.56 +0.1
232,087 - GFF2442 0.56 +0.4
232,129 + GFF2442 0.59 +0.3
232,129 + GFF2442 0.59 +0.8
232,130 - GFF2442 0.59 +1.8
232,130 - GFF2442 0.59 -0.4
232,130 - GFF2442 0.59 +0.3
232,130 - GFF2442 0.59 +1.3
232,130 - GFF2442 0.59 -0.1
232,130 - GFF2442 0.59 +2.1
232,130 - GFF2442 0.59 +1.7
232,146 + GFF2442 0.61 -0.3
232,146 + GFF2442 0.61 +1.0
232,471 + GFF2442 0.83 +0.9
232,556 + GFF2442 0.89 +0.9
232,556 + GFF2442 0.89 -1.4
232,557 - GFF2442 0.89 -0.5
232,621 + +1.1
232,717 + -1.5
232,717 + +0.0
232,718 - +0.8
232,809 + -0.3
232,820 + -0.5
232,820 + -1.5
232,821 - -0.2
232,821 - -0.8
232,844 - +1.1
232,844 - +1.3
233,110 + GFF2443 0.65 -0.3
233,110 + GFF2443 0.65 -1.3
233,110 + GFF2443 0.65 +0.8
233,110 + GFF2443 0.65 -1.3
233,110 + GFF2443 0.65 -0.3
233,111 - GFF2443 0.66 +0.5
233,111 - GFF2443 0.66 -0.9
233,111 - GFF2443 0.66 +2.2
233,116 + GFF2443 0.67 +0.9
233,116 + GFF2443 0.67 +0.6
233,116 + GFF2443 0.67 +0.3
233,116 + GFF2443 0.67 +0.4
233,116 + GFF2443 0.67 +0.5
233,116 + GFF2443 0.67 -0.1
233,116 + GFF2443 0.67 -0.7
233,116 + GFF2443 0.67 -0.8
233,116 + GFF2443 0.67 +0.5
233,116 + GFF2443 0.67 +0.1
233,116 + GFF2443 0.67 -0.1
233,116 + GFF2443 0.67 -0.1
233,117 - GFF2443 0.67 +0.5
233,117 - GFF2443 0.67 +0.5
233,117 - GFF2443 0.67 +0.5
233,117 - GFF2443 0.67 +0.3
233,117 - GFF2443 0.67 +0.4
233,117 - GFF2443 0.67 -0.3
233,117 - GFF2443 0.67 +0.4
233,117 - GFF2443 0.67 -1.0
233,198 + GFF2443 0.87 +0.2
233,269 + +0.3
233,269 + +0.9
233,269 + +0.5
233,270 - -0.7
233,270 - +0.1
233,270 - -0.1
233,437 + GFF2444 0.60 -1.8
233,437 + GFF2444 0.60 -1.1
233,437 + GFF2444 0.60 +0.0
233,437 + GFF2444 0.60 -0.8
233,437 + GFF2444 0.60 +0.1
233,437 + GFF2444 0.60 +0.4
233,437 + GFF2444 0.60 -0.4
233,437 + GFF2444 0.60 -1.3
233,437 + GFF2444 0.60 -0.9
233,437 + GFF2444 0.60 -0.5
233,438 - GFF2444 0.60 +0.2
233,438 - GFF2444 0.60 +0.3
233,438 - GFF2444 0.60 +0.0
233,438 - GFF2444 0.60 +0.2
233,438 - GFF2444 0.60 -0.5
233,438 - GFF2444 0.60 -1.1
233,438 - GFF2444 0.60 -1.1
233,438 - GFF2444 0.60 -0.7
233,438 - GFF2444 0.60 +1.7
233,438 - GFF2444 0.60 +0.4
233,445 + GFF2444 0.63 -0.8
233,538 + +1.1
233,568 + -0.5
233,618 - +1.2
233,622 - +0.6
233,622 - -0.0
233,629 - +0.4
233,629 - +0.8
233,629 - +0.9
233,631 + +0.2
233,632 - +0.6
233,688 - +0.8

Or see this region's nucleotide sequence