Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2245 and GFF2246 are separated by 162 nucleotides GFF2246 and GFF2247 are separated by 159 nucleotides GFF2247 and GFF2248 are separated by 514 nucleotides GFF2248 and GFF2249 are separated by 107 nucleotides
GFF2245 - hypothetical protein, at 16,098 to 16,601
GFF2245
GFF2246 - hypothetical protein, at 16,764 to 17,174
GFF2246
GFF2247 - Trans-aconitate 2-methyltransferase, at 17,334 to 18,104
GFF2247
GFF2248 - hypothetical protein, at 18,619 to 18,798
GFF2248
GFF2249 - hypothetical protein, at 18,906 to 19,313
GFF2249
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 16.440 kb on + strand, within GFF2245 at 16.440 kb on + strand, within GFF2245 at 16.441 kb on - strand, within GFF2245 at 16.441 kb on - strand, within GFF2245 at 16.757 kb on + strand at 16.757 kb on + strand at 16.757 kb on + strand at 16.758 kb on - strand at 16.850 kb on - strand, within GFF2246 at 17.030 kb on + strand, within GFF2246 at 17.030 kb on + strand, within GFF2246 at 17.031 kb on - strand, within GFF2246 at 17.031 kb on - strand, within GFF2246 at 17.031 kb on - strand, within GFF2246 at 17.060 kb on - strand, within GFF2246 at 17.238 kb on + strand at 17.238 kb on + strand at 17.264 kb on - strand at 17.274 kb on + strand at 17.274 kb on + strand at 17.355 kb on + strand at 17.355 kb on + strand at 17.355 kb on + strand at 17.355 kb on + strand at 17.356 kb on - strand at 17.356 kb on - strand at 17.841 kb on + strand, within GFF2247 at 17.841 kb on + strand, within GFF2247 at 17.895 kb on + strand, within GFF2247 at 17.895 kb on + strand, within GFF2247 at 17.895 kb on + strand, within GFF2247 at 17.896 kb on - strand, within GFF2247 at 17.896 kb on - strand, within GFF2247 at 17.896 kb on - strand, within GFF2247 at 17.896 kb on - strand, within GFF2247 at 18.000 kb on + strand, within GFF2247 at 18.086 kb on + strand at 18.086 kb on + strand at 18.086 kb on + strand at 18.086 kb on + strand at 18.086 kb on + strand at 18.086 kb on + strand at 18.087 kb on - strand at 18.087 kb on - strand at 18.115 kb on + strand at 18.138 kb on + strand at 18.201 kb on + strand at 18.330 kb on + strand at 18.330 kb on + strand at 18.384 kb on + strand at 18.384 kb on + strand at 18.385 kb on - strand at 18.455 kb on - strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.530 kb on - strand at 18.530 kb on - strand at 18.530 kb on - strand at 18.530 kb on - strand at 18.530 kb on - strand at 18.530 kb on - strand at 18.530 kb on - strand at 18.530 kb on - strand at 18.628 kb on - strand at 18.689 kb on - strand, within GFF2248 at 18.818 kb on + strand at 18.978 kb on + strand, within GFF2249 at 18.978 kb on + strand, within GFF2249 at 18.978 kb on + strand, within GFF2249 at 18.978 kb on + strand, within GFF2249 at 18.978 kb on + strand, within GFF2249 at 18.979 kb on - strand, within GFF2249 at 18.979 kb on - strand, within GFF2249 at 18.985 kb on + strand, within GFF2249 at 18.986 kb on - strand, within GFF2249 at 18.986 kb on - strand, within GFF2249 at 18.986 kb on - strand, within GFF2249 at 19.051 kb on + strand, within GFF2249 at 19.052 kb on - strand, within GFF2249
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 16,440 + GFF2245 0.68 +0.2 16,440 + GFF2245 0.68 +0.2 16,441 - GFF2245 0.68 -0.6 16,441 - GFF2245 0.68 -0.6 16,757 + +0.4 16,757 + -1.8 16,757 + +0.2 16,758 - +0.3 16,850 - GFF2246 0.21 +0.1 17,030 + GFF2246 0.65 -0.1 17,030 + GFF2246 0.65 +0.0 17,031 - GFF2246 0.65 -0.1 17,031 - GFF2246 0.65 +0.1 17,031 - GFF2246 0.65 -0.7 17,060 - GFF2246 0.72 +0.0 17,238 + -2.8 17,238 + -0.2 17,264 - -0.4 17,274 + -0.1 17,274 + -0.1 17,355 + -0.5 17,355 + +1.5 17,355 + +0.6 17,355 + -0.3 17,356 - -0.4 17,356 - -1.0 17,841 + GFF2247 0.66 +0.1 17,841 + GFF2247 0.66 -1.2 17,895 + GFF2247 0.73 -0.2 17,895 + GFF2247 0.73 +0.1 17,895 + GFF2247 0.73 -0.7 17,896 - GFF2247 0.73 -0.2 17,896 - GFF2247 0.73 -0.6 17,896 - GFF2247 0.73 -0.4 17,896 - GFF2247 0.73 -0.2 18,000 + GFF2247 0.86 +0.6 18,086 + +0.2 18,086 + +0.3 18,086 + +0.0 18,086 + -0.4 18,086 + -1.3 18,086 + -0.2 18,087 - -0.8 18,087 - -0.6 18,115 + -0.5 18,138 + +0.3 18,201 + +0.8 18,330 + -1.4 18,330 + -0.5 18,384 + +1.2 18,384 + +0.1 18,385 - +0.6 18,455 - -0.2 18,529 + +0.4 18,529 + +0.1 18,529 + +0.3 18,529 + -0.3 18,529 + -0.7 18,529 + +0.5 18,529 + -0.5 18,529 + -1.4 18,529 + +0.3 18,529 + -0.7 18,529 + -0.8 18,529 + +0.9 18,529 + -0.6 18,530 - +0.9 18,530 - -0.3 18,530 - -1.1 18,530 - -0.7 18,530 - -0.2 18,530 - +0.1 18,530 - -1.2 18,530 - +0.8 18,628 - -0.9 18,689 - GFF2248 0.39 -1.0 18,818 + -0.9 18,978 + GFF2249 0.18 -1.5 18,978 + GFF2249 0.18 -0.6 18,978 + GFF2249 0.18 -0.5 18,978 + GFF2249 0.18 +1.3 18,978 + GFF2249 0.18 +0.2 18,979 - GFF2249 0.18 +0.1 18,979 - GFF2249 0.18 -1.3 18,985 + GFF2249 0.19 -0.3 18,986 - GFF2249 0.20 +1.8 18,986 - GFF2249 0.20 +0.8 18,986 - GFF2249 0.20 +0.1 19,051 + GFF2249 0.36 +1.5 19,052 - GFF2249 0.36 -0.2
Or see this region's nucleotide sequence