Strain Fitness in Klebsiella pneumoniae MKP103 around KDGMDA_24640

Experiment: Roth20_S_Rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntKDGMDA_24635 and KDGMDA_24640 are separated by 86 nucleotidesKDGMDA_24640 and KDGMDA_24645 are separated by 39 nucleotidesKDGMDA_24645 and KDGMDA_24650 are separated by 3 nucleotides KDGMDA_24635: KDGMDA_24635 - sodium-potassium/proton antiporter ChaA, at 4,579,342 to 4,580,442 _24635 KDGMDA_24640: KDGMDA_24640 - 3-deoxy-8-phosphooctulonate synthase, at 4,580,529 to 4,581,383 _24640 KDGMDA_24645: KDGMDA_24645 - invasion regulator SirB1, at 4,581,423 to 4,582,235 _24645 KDGMDA_24650: KDGMDA_24650 - invasion regulator SirB2, at 4,582,239 to 4,582,631 _24650 Position (kb) 4580 4581 4582Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4579.571 kb on + strand, within KDGMDA_24635at 4579.671 kb on + strand, within KDGMDA_24635at 4579.671 kb on + strand, within KDGMDA_24635at 4579.671 kb on + strand, within KDGMDA_24635at 4579.671 kb on + strand, within KDGMDA_24635at 4579.672 kb on - strand, within KDGMDA_24635at 4579.674 kb on + strand, within KDGMDA_24635at 4579.674 kb on + strand, within KDGMDA_24635at 4579.675 kb on - strand, within KDGMDA_24635at 4579.741 kb on + strand, within KDGMDA_24635at 4579.741 kb on + strand, within KDGMDA_24635at 4579.741 kb on + strand, within KDGMDA_24635at 4579.741 kb on + strand, within KDGMDA_24635at 4579.742 kb on - strand, within KDGMDA_24635at 4579.742 kb on - strand, within KDGMDA_24635at 4579.743 kb on + strand, within KDGMDA_24635at 4579.743 kb on + strand, within KDGMDA_24635at 4579.744 kb on - strand, within KDGMDA_24635at 4579.744 kb on - strand, within KDGMDA_24635at 4579.744 kb on - strand, within KDGMDA_24635at 4579.744 kb on - strand, within KDGMDA_24635at 4579.761 kb on + strand, within KDGMDA_24635at 4579.768 kb on + strand, within KDGMDA_24635at 4579.886 kb on - strand, within KDGMDA_24635at 4579.886 kb on - strand, within KDGMDA_24635at 4579.902 kb on + strand, within KDGMDA_24635at 4579.936 kb on + strand, within KDGMDA_24635at 4580.010 kb on + strand, within KDGMDA_24635at 4580.192 kb on + strand, within KDGMDA_24635at 4580.192 kb on + strand, within KDGMDA_24635at 4580.192 kb on + strand, within KDGMDA_24635at 4580.193 kb on - strand, within KDGMDA_24635at 4580.353 kb on - strandat 4580.420 kb on - strandat 4580.530 kb on + strandat 4580.530 kb on + strandat 4581.395 kb on - strandat 4581.425 kb on - strandat 4581.435 kb on - strandat 4581.514 kb on + strand, within KDGMDA_24645at 4581.559 kb on + strand, within KDGMDA_24645at 4581.559 kb on + strand, within KDGMDA_24645at 4581.559 kb on + strand, within KDGMDA_24645at 4581.559 kb on + strand, within KDGMDA_24645at 4581.560 kb on - strand, within KDGMDA_24645at 4581.560 kb on - strand, within KDGMDA_24645at 4581.560 kb on - strand, within KDGMDA_24645at 4581.561 kb on + strand, within KDGMDA_24645at 4581.603 kb on - strand, within KDGMDA_24645at 4581.771 kb on + strand, within KDGMDA_24645at 4581.772 kb on - strand, within KDGMDA_24645at 4581.783 kb on - strand, within KDGMDA_24645at 4581.981 kb on + strand, within KDGMDA_24645at 4582.037 kb on - strand, within KDGMDA_24645at 4582.060 kb on - strand, within KDGMDA_24645at 4582.283 kb on + strand, within KDGMDA_24650at 4582.284 kb on - strand, within KDGMDA_24650at 4582.284 kb on - strand, within KDGMDA_24650at 4582.361 kb on + strand, within KDGMDA_24650at 4582.369 kb on - strand, within KDGMDA_24650at 4582.378 kb on + strand, within KDGMDA_24650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Roth20_S_Rep1
remove
4,579,571 + KDGMDA_24635 0.21 +0.1
4,579,671 + KDGMDA_24635 0.30 +0.5
4,579,671 + KDGMDA_24635 0.30 +1.4
4,579,671 + KDGMDA_24635 0.30 +0.9
4,579,671 + KDGMDA_24635 0.30 +0.2
4,579,672 - KDGMDA_24635 0.30 -0.6
4,579,674 + KDGMDA_24635 0.30 -0.4
4,579,674 + KDGMDA_24635 0.30 +0.2
4,579,675 - KDGMDA_24635 0.30 -0.5
4,579,741 + KDGMDA_24635 0.36 +1.0
4,579,741 + KDGMDA_24635 0.36 -2.5
4,579,741 + KDGMDA_24635 0.36 +1.1
4,579,741 + KDGMDA_24635 0.36 +0.0
4,579,742 - KDGMDA_24635 0.36 +0.6
4,579,742 - KDGMDA_24635 0.36 +0.0
4,579,743 + KDGMDA_24635 0.36 +0.8
4,579,743 + KDGMDA_24635 0.36 +0.4
4,579,744 - KDGMDA_24635 0.37 +0.2
4,579,744 - KDGMDA_24635 0.37 +1.0
4,579,744 - KDGMDA_24635 0.37 +0.7
4,579,744 - KDGMDA_24635 0.37 +0.4
4,579,761 + KDGMDA_24635 0.38 +1.0
4,579,768 + KDGMDA_24635 0.39 -0.7
4,579,886 - KDGMDA_24635 0.49 +2.2
4,579,886 - KDGMDA_24635 0.49 -1.2
4,579,902 + KDGMDA_24635 0.51 +1.7
4,579,936 + KDGMDA_24635 0.54 +3.2
4,580,010 + KDGMDA_24635 0.61 -0.6
4,580,192 + KDGMDA_24635 0.77 +0.6
4,580,192 + KDGMDA_24635 0.77 -0.4
4,580,192 + KDGMDA_24635 0.77 -1.6
4,580,193 - KDGMDA_24635 0.77 -0.8
4,580,353 - +0.6
4,580,420 - +0.4
4,580,530 + -0.1
4,580,530 + +0.4
4,581,395 - -0.1
4,581,425 - +0.0
4,581,435 - -1.6
4,581,514 + KDGMDA_24645 0.11 +2.9
4,581,559 + KDGMDA_24645 0.17 +2.2
4,581,559 + KDGMDA_24645 0.17 +0.8
4,581,559 + KDGMDA_24645 0.17 -0.8
4,581,559 + KDGMDA_24645 0.17 -1.1
4,581,560 - KDGMDA_24645 0.17 -0.6
4,581,560 - KDGMDA_24645 0.17 -0.1
4,581,560 - KDGMDA_24645 0.17 +2.7
4,581,561 + KDGMDA_24645 0.17 -0.3
4,581,603 - KDGMDA_24645 0.22 -0.3
4,581,771 + KDGMDA_24645 0.43 +1.5
4,581,772 - KDGMDA_24645 0.43 +0.8
4,581,783 - KDGMDA_24645 0.44 -0.7
4,581,981 + KDGMDA_24645 0.69 -1.9
4,582,037 - KDGMDA_24645 0.76 +1.8
4,582,060 - KDGMDA_24645 0.78 -0.9
4,582,283 + KDGMDA_24650 0.11 +1.8
4,582,284 - KDGMDA_24650 0.11 +2.2
4,582,284 - KDGMDA_24650 0.11 +0.0
4,582,361 + KDGMDA_24650 0.31 +1.0
4,582,369 - KDGMDA_24650 0.33 +0.6
4,582,378 + KDGMDA_24650 0.35 -0.1

Or see this region's nucleotide sequence