Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_13405 and OKGIIK_13410 are separated by 47 nucleotides OKGIIK_13410 and OKGIIK_13415 are separated by 228 nucleotides OKGIIK_13415 and OKGIIK_13420 are separated by 31 nucleotides OKGIIK_13420 and OKGIIK_13425 are separated by 274 nucleotides
OKGIIK_13405: OKGIIK_13405 - IS3 family transposase, at 2,895,346 to 2,896,164
_13405
OKGIIK_13410: OKGIIK_13410 - Mobile element protein, at 2,896,212 to 2,896,499
_13410
OKGIIK_13415: OKGIIK_13415 - SseB family protein, at 2,896,728 to 2,897,267
_13415
OKGIIK_13420: OKGIIK_13420 - DUF45 domain-containing protein, at 2,897,299 to 2,897,769
_13420
OKGIIK_13425: OKGIIK_13425 - DEAD/DEAH box helicase, at 2,898,044 to 2,901,340
_13425
Position (kb)
2896
2897
2898 Strain fitness (log2 ratio)
-2
-1
0
1 at 2896.531 kb on + strand at 2896.531 kb on + strand at 2896.531 kb on + strand at 2896.531 kb on + strand at 2896.602 kb on + strand at 2896.647 kb on + strand at 2896.647 kb on + strand at 2896.647 kb on + strand at 2896.648 kb on - strand at 2896.657 kb on + strand at 2896.657 kb on + strand at 2896.657 kb on + strand at 2896.658 kb on - strand at 2896.658 kb on - strand at 2896.658 kb on - strand at 2896.658 kb on - strand at 2896.658 kb on - strand at 2896.706 kb on - strand at 2896.706 kb on - strand at 2896.707 kb on - strand at 2896.848 kb on - strand, within OKGIIK_13415 at 2896.848 kb on - strand, within OKGIIK_13415 at 2896.939 kb on + strand, within OKGIIK_13415 at 2896.939 kb on + strand, within OKGIIK_13415 at 2896.940 kb on - strand, within OKGIIK_13415 at 2896.994 kb on - strand, within OKGIIK_13415 at 2897.035 kb on + strand, within OKGIIK_13415 at 2897.035 kb on + strand, within OKGIIK_13415 at 2897.035 kb on + strand, within OKGIIK_13415 at 2897.280 kb on - strand at 2897.280 kb on - strand at 2897.280 kb on - strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.301 kb on - strand at 2897.301 kb on - strand at 2897.303 kb on - strand at 2897.303 kb on - strand at 2897.312 kb on - strand at 2897.583 kb on + strand, within OKGIIK_13420 at 2897.584 kb on - strand, within OKGIIK_13420 at 2897.765 kb on + strand at 2897.789 kb on + strand at 2897.803 kb on + strand at 2897.803 kb on + strand at 2897.803 kb on + strand at 2897.803 kb on + strand at 2897.804 kb on - strand at 2897.804 kb on - strand at 2897.814 kb on - strand at 2897.976 kb on + strand at 2897.976 kb on + strand at 2897.976 kb on + strand at 2897.977 kb on - strand at 2897.977 kb on - strand at 2897.981 kb on - strand at 2897.981 kb on - strand at 2897.981 kb on - strand at 2898.008 kb on + strand at 2898.009 kb on - strand at 2898.009 kb on - strand at 2898.056 kb on + strand at 2898.218 kb on + strand at 2898.219 kb on - strand at 2898.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,896,531 + -1.4 2,896,531 + -1.7 2,896,531 + -1.0 2,896,531 + +0.7 2,896,602 + -1.2 2,896,647 + +0.3 2,896,647 + +0.7 2,896,647 + +0.5 2,896,648 - -0.4 2,896,657 + -1.2 2,896,657 + -1.6 2,896,657 + +0.6 2,896,658 - -0.1 2,896,658 - -0.3 2,896,658 - -1.3 2,896,658 - -0.2 2,896,658 - -0.4 2,896,706 - -0.6 2,896,706 - +0.4 2,896,707 - +1.2 2,896,848 - OKGIIK_13415 0.22 -0.6 2,896,848 - OKGIIK_13415 0.22 -2.0 2,896,939 + OKGIIK_13415 0.39 +0.0 2,896,939 + OKGIIK_13415 0.39 -0.6 2,896,940 - OKGIIK_13415 0.39 +1.0 2,896,994 - OKGIIK_13415 0.49 -1.7 2,897,035 + OKGIIK_13415 0.57 -0.6 2,897,035 + OKGIIK_13415 0.57 -1.4 2,897,035 + OKGIIK_13415 0.57 +1.0 2,897,280 - -0.9 2,897,280 - +0.2 2,897,280 - +1.3 2,897,300 + +0.1 2,897,300 + -0.3 2,897,300 + +1.0 2,897,300 + -1.3 2,897,300 + -0.3 2,897,301 - -0.8 2,897,301 - +0.2 2,897,303 - -0.9 2,897,303 - -0.1 2,897,312 - -0.5 2,897,583 + OKGIIK_13420 0.60 -0.4 2,897,584 - OKGIIK_13420 0.61 -0.2 2,897,765 + -0.1 2,897,789 + -2.1 2,897,803 + -0.7 2,897,803 + -1.4 2,897,803 + -1.0 2,897,803 + +0.2 2,897,804 - -0.6 2,897,804 - -1.6 2,897,814 - -0.2 2,897,976 + +0.9 2,897,976 + -0.5 2,897,976 + -0.6 2,897,977 - -0.4 2,897,977 - -1.6 2,897,981 - -1.2 2,897,981 - -0.8 2,897,981 - -1.0 2,898,008 + -0.1 2,898,009 - +0.9 2,898,009 - +1.3 2,898,056 + -1.7 2,898,218 + -2.1 2,898,219 - +1.2 2,898,219 - +0.4
Or see this region's nucleotide sequence