Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07880

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrnc and OKGIIK_07875 are separated by 1 nucleotidesOKGIIK_07875 and lepB are separated by 176 nucleotideslepB and OKGIIK_07885 are separated by 99 nucleotides OKGIIK_07870: rnc - ribonuclease III, at 1,741,861 to 1,742,523 rnc OKGIIK_07875: OKGIIK_07875 - DUF4845 domain-containing protein, at 1,742,525 to 1,742,908 _07875 OKGIIK_07880: lepB - signal peptidase I, at 1,743,085 to 1,743,981 lepB OKGIIK_07885: OKGIIK_07885 - Elongation factor 4, at 1,744,081 to 1,745,871 _07885 Position (kb) 1743 1744Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1742.181 kb on - strand, within rncat 1742.181 kb on - strand, within rncat 1742.381 kb on + strand, within rncat 1742.382 kb on - strand, within rncat 1742.508 kb on - strandat 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.613 kb on + strand, within OKGIIK_07875at 1742.613 kb on + strand, within OKGIIK_07875at 1742.613 kb on + strand, within OKGIIK_07875at 1742.614 kb on - strand, within OKGIIK_07875at 1742.614 kb on - strand, within OKGIIK_07875at 1742.614 kb on - strand, within OKGIIK_07875at 1742.694 kb on + strand, within OKGIIK_07875at 1742.694 kb on + strand, within OKGIIK_07875at 1742.694 kb on + strand, within OKGIIK_07875at 1742.694 kb on + strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.808 kb on + strand, within OKGIIK_07875at 1742.808 kb on + strand, within OKGIIK_07875at 1742.809 kb on - strand, within OKGIIK_07875at 1742.809 kb on - strand, within OKGIIK_07875at 1742.809 kb on - strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.908 kb on + strandat 1742.908 kb on + strandat 1742.909 kb on - strandat 1742.909 kb on - strandat 1742.909 kb on - strandat 1742.909 kb on - strandat 1742.939 kb on + strandat 1742.939 kb on + strandat 1742.939 kb on + strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.995 kb on + strandat 1742.995 kb on + strandat 1742.995 kb on + strandat 1742.996 kb on - strandat 1742.996 kb on - strandat 1742.996 kb on - strandat 1742.996 kb on - strandat 1742.996 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.100 kb on - strandat 1744.463 kb on + strand, within OKGIIK_07885at 1744.479 kb on - strand, within OKGIIK_07885at 1744.544 kb on + strand, within OKGIIK_07885at 1744.544 kb on + strand, within OKGIIK_07885at 1744.545 kb on - strand, within OKGIIK_07885at 1744.545 kb on - strand, within OKGIIK_07885at 1744.545 kb on - strand, within OKGIIK_07885at 1744.571 kb on + strand, within OKGIIK_07885at 1744.572 kb on - strand, within OKGIIK_07885at 1744.631 kb on + strand, within OKGIIK_07885at 1744.631 kb on + strand, within OKGIIK_07885at 1744.632 kb on - strand, within OKGIIK_07885at 1744.632 kb on - strand, within OKGIIK_07885at 1744.757 kb on + strand, within OKGIIK_07885at 1744.758 kb on - strand, within OKGIIK_07885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
1,742,181 - rnc OKGIIK_07870 0.48 +0.1
1,742,181 - rnc OKGIIK_07870 0.48 -3.4
1,742,381 + rnc OKGIIK_07870 0.78 -0.3
1,742,382 - rnc OKGIIK_07870 0.79 -0.6
1,742,508 - -0.6
1,742,589 + OKGIIK_07875 0.17 +1.1
1,742,589 + OKGIIK_07875 0.17 +0.3
1,742,589 + OKGIIK_07875 0.17 -0.1
1,742,589 + OKGIIK_07875 0.17 -0.9
1,742,589 + OKGIIK_07875 0.17 -1.6
1,742,589 + OKGIIK_07875 0.17 +0.3
1,742,589 + OKGIIK_07875 0.17 -1.1
1,742,589 + OKGIIK_07875 0.17 -1.6
1,742,589 + OKGIIK_07875 0.17 +1.4
1,742,589 + OKGIIK_07875 0.17 -1.8
1,742,589 + OKGIIK_07875 0.17 -0.9
1,742,589 + OKGIIK_07875 0.17 -0.9
1,742,589 + OKGIIK_07875 0.17 +1.7
1,742,589 + OKGIIK_07875 0.17 -0.3
1,742,589 + OKGIIK_07875 0.17 -0.5
1,742,589 + OKGIIK_07875 0.17 +0.2
1,742,589 + OKGIIK_07875 0.17 -0.3
1,742,589 + OKGIIK_07875 0.17 -2.3
1,742,589 + OKGIIK_07875 0.17 -1.9
1,742,589 + OKGIIK_07875 0.17 -0.9
1,742,589 + OKGIIK_07875 0.17 +1.4
1,742,590 - OKGIIK_07875 0.17 -0.3
1,742,590 - OKGIIK_07875 0.17 -0.2
1,742,590 - OKGIIK_07875 0.17 -0.2
1,742,590 - OKGIIK_07875 0.17 -0.1
1,742,590 - OKGIIK_07875 0.17 +0.1
1,742,590 - OKGIIK_07875 0.17 -1.0
1,742,590 - OKGIIK_07875 0.17 -1.1
1,742,590 - OKGIIK_07875 0.17 -0.2
1,742,590 - OKGIIK_07875 0.17 -1.8
1,742,590 - OKGIIK_07875 0.17 -1.2
1,742,590 - OKGIIK_07875 0.17 +0.5
1,742,590 - OKGIIK_07875 0.17 +1.1
1,742,590 - OKGIIK_07875 0.17 +0.5
1,742,590 - OKGIIK_07875 0.17 -0.7
1,742,590 - OKGIIK_07875 0.17 -0.3
1,742,590 - OKGIIK_07875 0.17 -0.8
1,742,590 - OKGIIK_07875 0.17 +1.3
1,742,590 - OKGIIK_07875 0.17 +0.0
1,742,590 - OKGIIK_07875 0.17 -1.6
1,742,590 - OKGIIK_07875 0.17 -0.3
1,742,590 - OKGIIK_07875 0.17 +0.3
1,742,613 + OKGIIK_07875 0.23 +0.4
1,742,613 + OKGIIK_07875 0.23 -1.5
1,742,613 + OKGIIK_07875 0.23 +0.7
1,742,614 - OKGIIK_07875 0.23 -1.8
1,742,614 - OKGIIK_07875 0.23 -1.0
1,742,614 - OKGIIK_07875 0.23 +0.8
1,742,694 + OKGIIK_07875 0.44 +0.3
1,742,694 + OKGIIK_07875 0.44 +0.1
1,742,694 + OKGIIK_07875 0.44 +0.8
1,742,694 + OKGIIK_07875 0.44 +0.7
1,742,695 - OKGIIK_07875 0.44 -1.5
1,742,695 - OKGIIK_07875 0.44 +0.7
1,742,695 - OKGIIK_07875 0.44 -1.0
1,742,695 - OKGIIK_07875 0.44 +0.7
1,742,695 - OKGIIK_07875 0.44 -0.9
1,742,695 - OKGIIK_07875 0.44 -1.7
1,742,695 - OKGIIK_07875 0.44 +0.9
1,742,695 - OKGIIK_07875 0.44 +1.0
1,742,799 + OKGIIK_07875 0.71 -2.2
1,742,799 + OKGIIK_07875 0.71 -2.2
1,742,799 + OKGIIK_07875 0.71 +0.5
1,742,799 + OKGIIK_07875 0.71 -0.6
1,742,799 + OKGIIK_07875 0.71 -1.3
1,742,799 + OKGIIK_07875 0.71 -0.4
1,742,799 + OKGIIK_07875 0.71 -2.1
1,742,799 + OKGIIK_07875 0.71 +0.4
1,742,800 - OKGIIK_07875 0.72 +0.9
1,742,800 - OKGIIK_07875 0.72 +0.2
1,742,800 - OKGIIK_07875 0.72 +0.3
1,742,800 - OKGIIK_07875 0.72 +0.7
1,742,800 - OKGIIK_07875 0.72 -3.0
1,742,800 - OKGIIK_07875 0.72 -0.6
1,742,800 - OKGIIK_07875 0.72 +1.4
1,742,800 - OKGIIK_07875 0.72 +1.3
1,742,800 - OKGIIK_07875 0.72 +1.1
1,742,800 - OKGIIK_07875 0.72 +1.3
1,742,800 - OKGIIK_07875 0.72 -0.3
1,742,800 - OKGIIK_07875 0.72 -0.0
1,742,800 - OKGIIK_07875 0.72 -0.1
1,742,800 - OKGIIK_07875 0.72 +1.3
1,742,808 + OKGIIK_07875 0.74 -0.0
1,742,808 + OKGIIK_07875 0.74 -0.5
1,742,809 - OKGIIK_07875 0.74 +0.4
1,742,809 - OKGIIK_07875 0.74 +1.3
1,742,809 - OKGIIK_07875 0.74 +1.8
1,742,835 + OKGIIK_07875 0.81 -0.3
1,742,835 + OKGIIK_07875 0.81 +0.5
1,742,835 + OKGIIK_07875 0.81 -3.1
1,742,835 + OKGIIK_07875 0.81 -1.0
1,742,835 + OKGIIK_07875 0.81 -0.3
1,742,835 + OKGIIK_07875 0.81 -1.6
1,742,835 + OKGIIK_07875 0.81 -0.6
1,742,836 - OKGIIK_07875 0.81 -0.2
1,742,836 - OKGIIK_07875 0.81 +0.1
1,742,836 - OKGIIK_07875 0.81 -0.8
1,742,836 - OKGIIK_07875 0.81 +0.1
1,742,836 - OKGIIK_07875 0.81 -3.0
1,742,836 - OKGIIK_07875 0.81 +0.1
1,742,836 - OKGIIK_07875 0.81 -0.3
1,742,836 - OKGIIK_07875 0.81 -1.0
1,742,836 - OKGIIK_07875 0.81 -0.7
1,742,836 - OKGIIK_07875 0.81 -0.9
1,742,908 + -0.3
1,742,908 + -1.1
1,742,909 - +0.5
1,742,909 - +0.4
1,742,909 - -0.5
1,742,909 - -0.9
1,742,939 + -0.8
1,742,939 + -0.2
1,742,939 + -0.0
1,742,940 - -0.0
1,742,940 - -0.3
1,742,940 - +0.7
1,742,940 - -1.2
1,742,940 - +1.0
1,742,940 - -0.8
1,742,940 - -0.6
1,742,940 - -0.5
1,742,940 - -1.7
1,742,940 - -0.9
1,742,940 - -1.6
1,742,995 + +0.3
1,742,995 + -0.6
1,742,995 + -3.7
1,742,996 - +0.8
1,742,996 - -0.6
1,742,996 - -1.3
1,742,996 - +0.4
1,742,996 - -0.3
1,744,083 - -1.2
1,744,083 - -0.3
1,744,083 - -2.9
1,744,083 - -0.6
1,744,083 - -1.3
1,744,083 - -1.9
1,744,083 - -0.5
1,744,083 - +0.1
1,744,083 - -1.3
1,744,100 - +1.0
1,744,463 + OKGIIK_07885 0.21 +0.5
1,744,479 - OKGIIK_07885 0.22 -2.0
1,744,544 + OKGIIK_07885 0.26 +1.0
1,744,544 + OKGIIK_07885 0.26 +0.2
1,744,545 - OKGIIK_07885 0.26 +0.4
1,744,545 - OKGIIK_07885 0.26 -0.6
1,744,545 - OKGIIK_07885 0.26 +0.1
1,744,571 + OKGIIK_07885 0.27 -1.6
1,744,572 - OKGIIK_07885 0.27 -2.3
1,744,631 + OKGIIK_07885 0.31 -1.1
1,744,631 + OKGIIK_07885 0.31 -2.4
1,744,632 - OKGIIK_07885 0.31 +1.1
1,744,632 - OKGIIK_07885 0.31 -0.6
1,744,757 + OKGIIK_07885 0.38 -0.3
1,744,758 - OKGIIK_07885 0.38 -0.3

Or see this region's nucleotide sequence