Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccoN and ccoO are separated by 127 nucleotides ccoO and OKGIIK_07665 overlap by 4 nucleotides OKGIIK_07665 and ccoP overlap by 4 nucleotides ccoP and OKGIIK_07675 overlap by 17 nucleotides OKGIIK_07675 and OKGIIK_07680 overlap by 4 nucleotides
OKGIIK_07655: ccoN - cytochrome-c oxidase, cbb3-type subunit I, at 1,693,313 to 1,694,779
ccoN
OKGIIK_07660: ccoO - cytochrome-c oxidase, cbb3-type subunit II, at 1,694,907 to 1,695,557
ccoO
OKGIIK_07665: OKGIIK_07665 - Cytochrome-c oxidase, at 1,695,554 to 1,695,727
_07665
OKGIIK_07670: ccoP - cytochrome-c oxidase, cbb3-type subunit III, at 1,695,724 to 1,696,635
ccoP
OKGIIK_07675: OKGIIK_07675 - hypothetical protein, at 1,696,619 to 1,696,855
_07675
OKGIIK_07680: OKGIIK_07680 - ATPase P, at 1,696,852 to 1,699,110
_07680
Position (kb) 1695
1696
1697 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1694.894 kb on + strand at 1695.057 kb on + strand, within ccoO at 1695.058 kb on - strand, within ccoO at 1695.192 kb on + strand, within ccoO at 1695.193 kb on - strand, within ccoO at 1695.644 kb on + strand, within OKGIIK_07665 at 1695.793 kb on + strand at 1696.072 kb on + strand, within ccoP at 1696.073 kb on - strand, within ccoP at 1696.328 kb on - strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.588 kb on + strand at 1696.589 kb on - strand at 1696.594 kb on + strand at 1696.780 kb on + strand, within OKGIIK_07675 at 1696.780 kb on + strand, within OKGIIK_07675 at 1697.228 kb on - strand, within OKGIIK_07680 at 1697.242 kb on + strand, within OKGIIK_07680
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 1,694,894 + -0.1 1,694,894 + +0.4 1,694,894 + -1.0 1,694,894 + -0.3 1,694,894 + +1.9 1,695,057 + ccoO OKGIIK_07660 0.23 +1.3 1,695,058 - ccoO OKGIIK_07660 0.23 -0.2 1,695,192 + ccoO OKGIIK_07660 0.44 +0.5 1,695,193 - ccoO OKGIIK_07660 0.44 +0.7 1,695,644 + OKGIIK_07665 0.52 -1.2 1,695,793 + +0.7 1,696,072 + ccoP OKGIIK_07670 0.38 -0.6 1,696,073 - ccoP OKGIIK_07670 0.38 +0.8 1,696,328 - ccoP OKGIIK_07670 0.66 +0.9 1,696,469 + ccoP OKGIIK_07670 0.82 -1.5 1,696,469 + ccoP OKGIIK_07670 0.82 -1.9 1,696,469 + ccoP OKGIIK_07670 0.82 -0.6 1,696,469 + ccoP OKGIIK_07670 0.82 +1.4 1,696,469 + ccoP OKGIIK_07670 0.82 -0.3 1,696,470 - ccoP OKGIIK_07670 0.82 -1.3 1,696,588 + +0.4 1,696,589 - -0.9 1,696,594 + +0.1 1,696,780 + OKGIIK_07675 0.68 +1.1 1,696,780 + OKGIIK_07675 0.68 -0.3 1,697,228 - OKGIIK_07680 0.17 -0.9 1,697,242 + OKGIIK_07680 0.17 -1.6
Or see this region's nucleotide sequence