Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06064

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06063 and MPMX19_06064 are separated by 49 nucleotidesMPMX19_06064 and MPMX19_06065 are separated by 32 nucleotides MPMX19_06063: MPMX19_06063 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 229,023 to 230,297 _06063 MPMX19_06064: MPMX19_06064 - Mannonate dehydratase, at 230,347 to 231,543 _06064 MPMX19_06065: MPMX19_06065 - Anaerobic nitric oxide reductase transcription regulator NorR, at 231,576 to 233,060 _06065 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1at 229.407 kb on + strand, within MPMX19_06063at 229.608 kb on + strand, within MPMX19_06063at 229.608 kb on + strand, within MPMX19_06063at 229.608 kb on + strand, within MPMX19_06063at 229.608 kb on + strand, within MPMX19_06063at 229.609 kb on - strand, within MPMX19_06063at 229.609 kb on - strand, within MPMX19_06063at 229.609 kb on - strand, within MPMX19_06063at 229.609 kb on - strand, within MPMX19_06063at 229.609 kb on - strand, within MPMX19_06063at 229.755 kb on + strand, within MPMX19_06063at 229.755 kb on + strand, within MPMX19_06063at 229.756 kb on - strand, within MPMX19_06063at 229.756 kb on - strand, within MPMX19_06063at 229.756 kb on - strand, within MPMX19_06063at 229.782 kb on + strand, within MPMX19_06063at 229.782 kb on + strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.783 kb on - strand, within MPMX19_06063at 229.953 kb on + strand, within MPMX19_06063at 229.953 kb on + strand, within MPMX19_06063at 229.953 kb on + strand, within MPMX19_06063at 229.953 kb on + strand, within MPMX19_06063at 229.954 kb on - strand, within MPMX19_06063at 230.250 kb on + strandat 230.250 kb on + strandat 230.250 kb on + strandat 230.250 kb on + strandat 230.250 kb on + strandat 230.250 kb on + strandat 230.250 kb on + strandat 230.251 kb on - strandat 230.251 kb on - strandat 230.251 kb on - strandat 230.251 kb on - strandat 230.251 kb on - strandat 230.251 kb on - strandat 230.326 kb on + strandat 230.327 kb on - strandat 230.327 kb on - strandat 230.327 kb on - strandat 230.327 kb on - strandat 230.608 kb on + strand, within MPMX19_06064at 230.608 kb on + strand, within MPMX19_06064at 230.609 kb on - strand, within MPMX19_06064at 230.609 kb on - strand, within MPMX19_06064at 230.609 kb on - strand, within MPMX19_06064at 230.659 kb on + strand, within MPMX19_06064at 230.659 kb on + strand, within MPMX19_06064at 230.659 kb on + strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.908 kb on + strand, within MPMX19_06064at 230.908 kb on + strand, within MPMX19_06064at 230.908 kb on + strand, within MPMX19_06064at 230.909 kb on - strand, within MPMX19_06064at 230.909 kb on - strand, within MPMX19_06064at 230.909 kb on - strand, within MPMX19_06064at 230.917 kb on + strand, within MPMX19_06064at 230.918 kb on - strand, within MPMX19_06064at 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.718 kb on + strandat 231.718 kb on + strandat 231.718 kb on + strandat 231.718 kb on + strandat 231.718 kb on + strandat 231.719 kb on - strandat 231.719 kb on - strandat 231.719 kb on - strandat 231.719 kb on - strandat 231.730 kb on + strand, within MPMX19_06065at 231.731 kb on - strand, within MPMX19_06065at 231.731 kb on - strand, within MPMX19_06065at 231.731 kb on - strand, within MPMX19_06065at 232.091 kb on - strand, within MPMX19_06065at 232.091 kb on - strand, within MPMX19_06065at 232.091 kb on - strand, within MPMX19_06065at 232.091 kb on - strand, within MPMX19_06065at 232.091 kb on - strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.339 kb on + strand, within MPMX19_06065at 232.339 kb on + strand, within MPMX19_06065at 232.339 kb on + strand, within MPMX19_06065at 232.339 kb on + strand, within MPMX19_06065at 232.340 kb on - strand, within MPMX19_06065at 232.340 kb on - strand, within MPMX19_06065at 232.340 kb on - strand, within MPMX19_06065at 232.340 kb on - strand, within MPMX19_06065at 232.340 kb on - strand, within MPMX19_06065

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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229,407 + MPMX19_06063 0.30 +0.0
229,608 + MPMX19_06063 0.46 -0.6
229,608 + MPMX19_06063 0.46 -0.2
229,608 + MPMX19_06063 0.46 +0.3
229,608 + MPMX19_06063 0.46 -0.7
229,609 - MPMX19_06063 0.46 -0.4
229,609 - MPMX19_06063 0.46 +0.6
229,609 - MPMX19_06063 0.46 -1.1
229,609 - MPMX19_06063 0.46 +0.2
229,609 - MPMX19_06063 0.46 -0.7
229,755 + MPMX19_06063 0.57 -0.8
229,755 + MPMX19_06063 0.57 -0.2
229,756 - MPMX19_06063 0.57 -1.1
229,756 - MPMX19_06063 0.57 -0.7
229,756 - MPMX19_06063 0.57 -0.7
229,782 + MPMX19_06063 0.60 -0.4
229,782 + MPMX19_06063 0.60 -0.4
229,783 - MPMX19_06063 0.60 +0.2
229,783 - MPMX19_06063 0.60 -1.5
229,783 - MPMX19_06063 0.60 -1.6
229,783 - MPMX19_06063 0.60 -0.3
229,783 - MPMX19_06063 0.60 -0.3
229,783 - MPMX19_06063 0.60 -0.9
229,953 + MPMX19_06063 0.73 -1.6
229,953 + MPMX19_06063 0.73 -0.7
229,953 + MPMX19_06063 0.73 +0.4
229,953 + MPMX19_06063 0.73 -0.7
229,954 - MPMX19_06063 0.73 -0.5
230,250 + -0.6
230,250 + +0.6
230,250 + -0.7
230,250 + -1.9
230,250 + -2.0
230,250 + -0.8
230,250 + -0.8
230,251 - -1.6
230,251 - -0.1
230,251 - +0.7
230,251 - -0.0
230,251 - -0.2
230,251 - +0.3
230,326 + -1.6
230,327 - -1.0
230,327 - +1.0
230,327 - -0.6
230,327 - -0.4
230,608 + MPMX19_06064 0.22 +0.3
230,608 + MPMX19_06064 0.22 -0.8
230,609 - MPMX19_06064 0.22 -1.7
230,609 - MPMX19_06064 0.22 -1.4
230,609 - MPMX19_06064 0.22 +1.0
230,659 + MPMX19_06064 0.26 +0.1
230,659 + MPMX19_06064 0.26 -1.6
230,659 + MPMX19_06064 0.26 -1.0
230,660 - MPMX19_06064 0.26 -0.9
230,660 - MPMX19_06064 0.26 -1.5
230,660 - MPMX19_06064 0.26 -1.0
230,660 - MPMX19_06064 0.26 +0.4
230,660 - MPMX19_06064 0.26 -0.9
230,660 - MPMX19_06064 0.26 -2.1
230,770 + MPMX19_06064 0.35 +0.0
230,770 + MPMX19_06064 0.35 -0.4
230,770 + MPMX19_06064 0.35 -1.4
230,770 + MPMX19_06064 0.35 -0.7
230,770 + MPMX19_06064 0.35 -1.5
230,770 + MPMX19_06064 0.35 -0.4
230,770 + MPMX19_06064 0.35 -1.8
230,770 + MPMX19_06064 0.35 -0.9
230,770 + MPMX19_06064 0.35 -0.5
230,771 - MPMX19_06064 0.35 +0.2
230,771 - MPMX19_06064 0.35 +1.3
230,771 - MPMX19_06064 0.35 +0.1
230,771 - MPMX19_06064 0.35 -0.2
230,771 - MPMX19_06064 0.35 -0.9
230,771 - MPMX19_06064 0.35 -0.4
230,771 - MPMX19_06064 0.35 -0.9
230,771 - MPMX19_06064 0.35 -1.4
230,908 + MPMX19_06064 0.47 -0.5
230,908 + MPMX19_06064 0.47 +0.2
230,908 + MPMX19_06064 0.47 -1.1
230,909 - MPMX19_06064 0.47 -0.1
230,909 - MPMX19_06064 0.47 -0.8
230,909 - MPMX19_06064 0.47 +0.5
230,917 + MPMX19_06064 0.48 -0.7
230,918 - MPMX19_06064 0.48 +0.3
231,616 + -0.2
231,616 + +0.9
231,616 + +0.5
231,616 + -1.2
231,616 + -0.3
231,616 + -1.9
231,616 + -1.6
231,616 + -0.5
231,616 + +0.2
231,616 + +0.6
231,616 + -0.7
231,616 + -0.3
231,616 + -0.7
231,617 - -2.0
231,617 - -0.8
231,617 - -0.4
231,617 - +0.7
231,617 - -1.0
231,617 - -0.4
231,617 - -0.4
231,718 + +0.7
231,718 + -0.3
231,718 + +1.1
231,718 + -0.2
231,718 + -0.5
231,719 - -0.4
231,719 - -2.0
231,719 - -1.0
231,719 - -0.3
231,730 + MPMX19_06065 0.10 -0.5
231,731 - MPMX19_06065 0.10 -0.1
231,731 - MPMX19_06065 0.10 -1.0
231,731 - MPMX19_06065 0.10 +0.4
232,091 - MPMX19_06065 0.35 -0.9
232,091 - MPMX19_06065 0.35 +0.0
232,091 - MPMX19_06065 0.35 -1.6
232,091 - MPMX19_06065 0.35 -0.4
232,091 - MPMX19_06065 0.35 -0.0
232,093 + MPMX19_06065 0.35 -0.1
232,093 + MPMX19_06065 0.35 +1.0
232,093 + MPMX19_06065 0.35 -2.3
232,093 + MPMX19_06065 0.35 -0.3
232,093 + MPMX19_06065 0.35 -0.2
232,093 + MPMX19_06065 0.35 -0.5
232,093 + MPMX19_06065 0.35 +0.6
232,093 + MPMX19_06065 0.35 -2.2
232,093 + MPMX19_06065 0.35 -1.1
232,093 + MPMX19_06065 0.35 -0.3
232,093 + MPMX19_06065 0.35 +0.3
232,093 + MPMX19_06065 0.35 +0.2
232,093 + MPMX19_06065 0.35 -0.3
232,093 + MPMX19_06065 0.35 -0.4
232,093 + MPMX19_06065 0.35 -1.0
232,094 - MPMX19_06065 0.35 -1.4
232,094 - MPMX19_06065 0.35 -0.6
232,094 - MPMX19_06065 0.35 -0.6
232,094 - MPMX19_06065 0.35 -0.1
232,094 - MPMX19_06065 0.35 +0.5
232,094 - MPMX19_06065 0.35 -0.8
232,094 - MPMX19_06065 0.35 -0.7
232,339 + MPMX19_06065 0.51 -1.0
232,339 + MPMX19_06065 0.51 -1.2
232,339 + MPMX19_06065 0.51 +0.3
232,339 + MPMX19_06065 0.51 -1.5
232,340 - MPMX19_06065 0.51 -0.9
232,340 - MPMX19_06065 0.51 -0.2
232,340 - MPMX19_06065 0.51 -2.1
232,340 - MPMX19_06065 0.51 -0.2
232,340 - MPMX19_06065 0.51 -0.9

Or see this region's nucleotide sequence