Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05366

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05364 and MPMX19_05365 are separated by 17 nucleotidesMPMX19_05365 and MPMX19_05366 are separated by 2 nucleotidesMPMX19_05366 and MPMX19_05367 are separated by 64 nucleotidesMPMX19_05367 and MPMX19_05368 are separated by 368 nucleotides MPMX19_05364: MPMX19_05364 - Acetate CoA-transferase subunit beta, at 39,165 to 39,818 _05364 MPMX19_05365: MPMX19_05365 - Acetate CoA-transferase subunit alpha, at 39,836 to 40,495 _05365 MPMX19_05366: MPMX19_05366 - hypothetical protein, at 40,498 to 41,889 _05366 MPMX19_05367: MPMX19_05367 - hypothetical protein, at 41,954 to 42,388 _05367 MPMX19_05368: MPMX19_05368 - Copper chaperone CopZ, at 42,757 to 42,957 _05368 Position (kb) 40 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.827 kb on - strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.996 kb on + strand, within MPMX19_05365at 39.996 kb on + strand, within MPMX19_05365at 39.996 kb on + strand, within MPMX19_05365at 39.996 kb on + strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 40.011 kb on + strand, within MPMX19_05365at 40.012 kb on - strand, within MPMX19_05365at 40.012 kb on - strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.517 kb on + strandat 40.517 kb on + strandat 40.517 kb on + strandat 40.517 kb on + strandat 40.517 kb on + strandat 40.517 kb on + strandat 40.517 kb on + strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.518 kb on - strandat 40.520 kb on + strandat 40.520 kb on + strandat 40.520 kb on + strandat 40.520 kb on + strandat 40.520 kb on + strandat 40.520 kb on + strandat 40.521 kb on - strandat 40.521 kb on - strandat 40.521 kb on - strandat 40.521 kb on - strandat 40.521 kb on - strandat 41.123 kb on + strand, within MPMX19_05366at 41.123 kb on + strand, within MPMX19_05366at 41.123 kb on + strand, within MPMX19_05366at 41.123 kb on + strand, within MPMX19_05366at 41.124 kb on - strand, within MPMX19_05366at 41.124 kb on - strand, within MPMX19_05366at 41.124 kb on - strand, within MPMX19_05366at 41.255 kb on + strand, within MPMX19_05366at 41.256 kb on - strand, within MPMX19_05366at 41.256 kb on - strand, within MPMX19_05366at 41.300 kb on + strand, within MPMX19_05366at 41.300 kb on + strand, within MPMX19_05366at 41.300 kb on + strand, within MPMX19_05366at 41.300 kb on + strand, within MPMX19_05366at 41.300 kb on + strand, within MPMX19_05366at 41.301 kb on - strand, within MPMX19_05366at 41.301 kb on - strand, within MPMX19_05366at 41.301 kb on - strand, within MPMX19_05366at 41.301 kb on - strand, within MPMX19_05366at 41.360 kb on + strand, within MPMX19_05366at 41.360 kb on + strand, within MPMX19_05366at 41.360 kb on + strand, within MPMX19_05366at 41.360 kb on + strand, within MPMX19_05366at 41.360 kb on + strand, within MPMX19_05366at 41.360 kb on + strand, within MPMX19_05366at 41.361 kb on - strand, within MPMX19_05366at 41.361 kb on - strand, within MPMX19_05366at 41.361 kb on - strand, within MPMX19_05366at 41.361 kb on - strand, within MPMX19_05366at 41.361 kb on - strand, within MPMX19_05366at 41.361 kb on - strand, within MPMX19_05366at 41.361 kb on - strand, within MPMX19_05366at 41.519 kb on + strand, within MPMX19_05366at 41.519 kb on + strand, within MPMX19_05366at 41.520 kb on - strand, within MPMX19_05366at 41.520 kb on - strand, within MPMX19_05366at 41.520 kb on - strand, within MPMX19_05366at 41.520 kb on - strand, within MPMX19_05366at 41.558 kb on + strand, within MPMX19_05366at 41.558 kb on + strand, within MPMX19_05366at 41.558 kb on + strand, within MPMX19_05366at 41.558 kb on + strand, within MPMX19_05366at 41.558 kb on + strand, within MPMX19_05366at 41.558 kb on + strand, within MPMX19_05366at 41.558 kb on + strand, within MPMX19_05366at 41.559 kb on - strand, within MPMX19_05366at 41.559 kb on - strand, within MPMX19_05366at 41.705 kb on + strand, within MPMX19_05366at 41.705 kb on + strand, within MPMX19_05366at 41.705 kb on + strand, within MPMX19_05366at 41.705 kb on + strand, within MPMX19_05366at 41.705 kb on + strand, within MPMX19_05366at 41.705 kb on + strand, within MPMX19_05366at 41.705 kb on + strand, within MPMX19_05366at 41.705 kb on + strand, within MPMX19_05366at 41.705 kb on + strand, within MPMX19_05366at 41.705 kb on + strand, within MPMX19_05366at 41.706 kb on - strand, within MPMX19_05366at 41.706 kb on - strand, within MPMX19_05366at 41.706 kb on - strand, within MPMX19_05366at 41.706 kb on - strand, within MPMX19_05366at 41.706 kb on - strand, within MPMX19_05366at 41.706 kb on - strand, within MPMX19_05366at 41.706 kb on - strand, within MPMX19_05366at 41.706 kb on - strand, within MPMX19_05366at 41.910 kb on + strandat 41.997 kb on + strandat 41.997 kb on + strandat 41.997 kb on + strandat 41.997 kb on + strandat 41.997 kb on + strandat 41.998 kb on - strand, within MPMX19_05367at 41.998 kb on - strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.168 kb on + strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.169 kb on - strand, within MPMX19_05367at 42.174 kb on + strand, within MPMX19_05367at 42.174 kb on + strand, within MPMX19_05367at 42.174 kb on + strand, within MPMX19_05367at 42.174 kb on + strand, within MPMX19_05367at 42.175 kb on - strand, within MPMX19_05367at 42.175 kb on - strand, within MPMX19_05367at 42.231 kb on + strand, within MPMX19_05367at 42.297 kb on + strand, within MPMX19_05367at 42.414 kb on + strandat 42.414 kb on + strandat 42.415 kb on - strandat 42.451 kb on - strandat 42.463 kb on + strandat 42.463 kb on + strandat 42.463 kb on + strandat 42.464 kb on - strandat 42.464 kb on - strandat 42.464 kb on - strandat 42.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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39,718 + MPMX19_05364 0.85 -0.1
39,718 + MPMX19_05364 0.85 -0.9
39,718 + MPMX19_05364 0.85 -1.0
39,718 + MPMX19_05364 0.85 +0.5
39,718 + MPMX19_05364 0.85 -0.0
39,718 + MPMX19_05364 0.85 -0.9
39,718 + MPMX19_05364 0.85 -0.1
39,718 + MPMX19_05364 0.85 -0.2
39,718 + MPMX19_05364 0.85 -0.8
39,718 + MPMX19_05364 0.85 -0.1
39,719 - MPMX19_05364 0.85 -0.3
39,719 - MPMX19_05364 0.85 +0.1
39,719 - MPMX19_05364 0.85 -0.6
39,719 - MPMX19_05364 0.85 -0.3
39,719 - MPMX19_05364 0.85 -1.1
39,719 - MPMX19_05364 0.85 -0.1
39,827 - -0.3
39,861 + -1.9
39,861 + -0.8
39,861 + -0.3
39,861 + -1.2
39,861 + +0.7
39,861 + -0.6
39,861 + -0.0
39,861 + -0.2
39,861 + -0.8
39,862 - -0.4
39,862 - -0.7
39,862 - +0.4
39,862 - -0.4
39,862 - +0.8
39,862 - -2.1
39,862 - +0.7
39,862 - -2.3
39,862 - -1.3
39,862 - -1.4
39,862 - -0.2
39,862 - -0.9
39,862 - -0.2
39,862 - -1.1
39,862 - -0.4
39,996 + MPMX19_05365 0.24 +0.5
39,996 + MPMX19_05365 0.24 +0.9
39,996 + MPMX19_05365 0.24 -1.3
39,996 + MPMX19_05365 0.24 +0.8
39,997 - MPMX19_05365 0.24 +0.7
39,997 - MPMX19_05365 0.24 -0.8
39,997 - MPMX19_05365 0.24 +0.2
39,997 - MPMX19_05365 0.24 +0.2
40,011 + MPMX19_05365 0.27 +0.2
40,012 - MPMX19_05365 0.27 -0.3
40,012 - MPMX19_05365 0.27 +0.1
40,074 + MPMX19_05365 0.36 +0.1
40,074 + MPMX19_05365 0.36 +0.5
40,074 + MPMX19_05365 0.36 +0.6
40,074 + MPMX19_05365 0.36 -1.4
40,074 + MPMX19_05365 0.36 +0.2
40,074 + MPMX19_05365 0.36 -1.2
40,074 + MPMX19_05365 0.36 -2.0
40,074 + MPMX19_05365 0.36 +0.9
40,074 + MPMX19_05365 0.36 -1.0
40,074 + MPMX19_05365 0.36 -1.0
40,074 + MPMX19_05365 0.36 +0.6
40,074 + MPMX19_05365 0.36 +0.6
40,075 - MPMX19_05365 0.36 +1.8
40,075 - MPMX19_05365 0.36 +1.0
40,075 - MPMX19_05365 0.36 -0.8
40,075 - MPMX19_05365 0.36 -0.8
40,075 - MPMX19_05365 0.36 +1.1
40,075 - MPMX19_05365 0.36 -0.8
40,075 - MPMX19_05365 0.36 -1.8
40,075 - MPMX19_05365 0.36 -1.4
40,075 - MPMX19_05365 0.36 +0.9
40,075 - MPMX19_05365 0.36 -0.1
40,075 - MPMX19_05365 0.36 -0.1
40,517 + -1.4
40,517 + -0.0
40,517 + -0.2
40,517 + +0.3
40,517 + -0.1
40,517 + -0.7
40,517 + +0.1
40,518 - +0.5
40,518 - -0.8
40,518 - -0.8
40,518 - +0.3
40,518 - +1.1
40,518 - -0.3
40,520 + -0.8
40,520 + -0.2
40,520 + -1.1
40,520 + -0.2
40,520 + -1.4
40,520 + +0.5
40,521 - -0.5
40,521 - +0.5
40,521 - +0.0
40,521 - +0.2
40,521 - -0.6
41,123 + MPMX19_05366 0.45 +0.9
41,123 + MPMX19_05366 0.45 +0.2
41,123 + MPMX19_05366 0.45 -0.2
41,123 + MPMX19_05366 0.45 -1.1
41,124 - MPMX19_05366 0.45 -0.9
41,124 - MPMX19_05366 0.45 -0.5
41,124 - MPMX19_05366 0.45 -0.2
41,255 + MPMX19_05366 0.54 +0.6
41,256 - MPMX19_05366 0.54 -0.0
41,256 - MPMX19_05366 0.54 -0.0
41,300 + MPMX19_05366 0.58 -0.0
41,300 + MPMX19_05366 0.58 +1.1
41,300 + MPMX19_05366 0.58 -1.6
41,300 + MPMX19_05366 0.58 -0.8
41,300 + MPMX19_05366 0.58 -1.8
41,301 - MPMX19_05366 0.58 -0.8
41,301 - MPMX19_05366 0.58 -0.2
41,301 - MPMX19_05366 0.58 -1.0
41,301 - MPMX19_05366 0.58 -0.2
41,360 + MPMX19_05366 0.62 -0.4
41,360 + MPMX19_05366 0.62 -0.3
41,360 + MPMX19_05366 0.62 -1.4
41,360 + MPMX19_05366 0.62 +0.4
41,360 + MPMX19_05366 0.62 -1.4
41,360 + MPMX19_05366 0.62 +0.3
41,361 - MPMX19_05366 0.62 +0.2
41,361 - MPMX19_05366 0.62 -0.5
41,361 - MPMX19_05366 0.62 -0.0
41,361 - MPMX19_05366 0.62 -0.6
41,361 - MPMX19_05366 0.62 -0.0
41,361 - MPMX19_05366 0.62 -0.2
41,361 - MPMX19_05366 0.62 -1.7
41,519 + MPMX19_05366 0.73 +0.8
41,519 + MPMX19_05366 0.73 -2.4
41,520 - MPMX19_05366 0.73 -0.8
41,520 - MPMX19_05366 0.73 -0.1
41,520 - MPMX19_05366 0.73 -0.5
41,520 - MPMX19_05366 0.73 -0.2
41,558 + MPMX19_05366 0.76 -0.2
41,558 + MPMX19_05366 0.76 +0.1
41,558 + MPMX19_05366 0.76 -1.6
41,558 + MPMX19_05366 0.76 -0.8
41,558 + MPMX19_05366 0.76 -1.5
41,558 + MPMX19_05366 0.76 -0.4
41,558 + MPMX19_05366 0.76 +0.8
41,559 - MPMX19_05366 0.76 +0.2
41,559 - MPMX19_05366 0.76 -1.4
41,705 + MPMX19_05366 0.87 -1.2
41,705 + MPMX19_05366 0.87 -1.0
41,705 + MPMX19_05366 0.87 +0.6
41,705 + MPMX19_05366 0.87 -1.0
41,705 + MPMX19_05366 0.87 -0.0
41,705 + MPMX19_05366 0.87 -2.1
41,705 + MPMX19_05366 0.87 +0.4
41,705 + MPMX19_05366 0.87 +0.6
41,705 + MPMX19_05366 0.87 -1.5
41,705 + MPMX19_05366 0.87 -0.5
41,706 - MPMX19_05366 0.87 -1.0
41,706 - MPMX19_05366 0.87 -1.8
41,706 - MPMX19_05366 0.87 -0.1
41,706 - MPMX19_05366 0.87 -1.4
41,706 - MPMX19_05366 0.87 +0.6
41,706 - MPMX19_05366 0.87 -0.4
41,706 - MPMX19_05366 0.87 -0.2
41,706 - MPMX19_05366 0.87 -0.3
41,910 + +1.3
41,997 + -0.7
41,997 + -0.5
41,997 + -0.2
41,997 + -0.2
41,997 + +1.2
41,998 - MPMX19_05367 0.10 -0.4
41,998 - MPMX19_05367 0.10 -0.9
42,168 + MPMX19_05367 0.49 +1.2
42,168 + MPMX19_05367 0.49 -1.5
42,168 + MPMX19_05367 0.49 -0.4
42,168 + MPMX19_05367 0.49 +1.6
42,168 + MPMX19_05367 0.49 -0.6
42,168 + MPMX19_05367 0.49 +0.2
42,168 + MPMX19_05367 0.49 -2.0
42,168 + MPMX19_05367 0.49 +0.3
42,168 + MPMX19_05367 0.49 -0.0
42,168 + MPMX19_05367 0.49 -0.1
42,168 + MPMX19_05367 0.49 -1.8
42,168 + MPMX19_05367 0.49 +0.2
42,168 + MPMX19_05367 0.49 +0.3
42,168 + MPMX19_05367 0.49 -0.1
42,168 + MPMX19_05367 0.49 -0.5
42,168 + MPMX19_05367 0.49 +0.6
42,168 + MPMX19_05367 0.49 -1.0
42,168 + MPMX19_05367 0.49 -0.0
42,168 + MPMX19_05367 0.49 -3.0
42,168 + MPMX19_05367 0.49 -0.0
42,168 + MPMX19_05367 0.49 +1.6
42,168 + MPMX19_05367 0.49 +1.3
42,168 + MPMX19_05367 0.49 -0.2
42,168 + MPMX19_05367 0.49 -1.1
42,168 + MPMX19_05367 0.49 +0.0
42,168 + MPMX19_05367 0.49 -0.0
42,168 + MPMX19_05367 0.49 +0.6
42,168 + MPMX19_05367 0.49 +0.3
42,169 - MPMX19_05367 0.49 +0.7
42,169 - MPMX19_05367 0.49 +0.5
42,169 - MPMX19_05367 0.49 +0.4
42,169 - MPMX19_05367 0.49 +0.0
42,169 - MPMX19_05367 0.49 -1.5
42,169 - MPMX19_05367 0.49 -0.5
42,169 - MPMX19_05367 0.49 +1.0
42,169 - MPMX19_05367 0.49 -0.5
42,169 - MPMX19_05367 0.49 -0.5
42,169 - MPMX19_05367 0.49 +0.2
42,169 - MPMX19_05367 0.49 +1.1
42,169 - MPMX19_05367 0.49 +0.8
42,169 - MPMX19_05367 0.49 -0.0
42,174 + MPMX19_05367 0.51 -1.2
42,174 + MPMX19_05367 0.51 -1.9
42,174 + MPMX19_05367 0.51 -0.1
42,174 + MPMX19_05367 0.51 -0.4
42,175 - MPMX19_05367 0.51 -1.1
42,175 - MPMX19_05367 0.51 -0.0
42,231 + MPMX19_05367 0.64 -0.4
42,297 + MPMX19_05367 0.79 -0.6
42,414 + +0.5
42,414 + -0.5
42,415 - -2.2
42,451 - -0.9
42,463 + -0.7
42,463 + -0.0
42,463 + +1.8
42,464 - -1.9
42,464 - -0.0
42,464 - +0.9
42,464 - +0.0

Or see this region's nucleotide sequence