Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05000

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04999 and MPMX19_05000 are separated by 24 nucleotidesMPMX19_05000 and MPMX19_05001 are separated by 148 nucleotidesMPMX19_05001 and MPMX19_05002 are separated by 33 nucleotides MPMX19_04999: MPMX19_04999 - hypothetical protein, at 479,935 to 483,279 _04999 MPMX19_05000: MPMX19_05000 - hypothetical protein, at 483,304 to 484,149 _05000 MPMX19_05001: MPMX19_05001 - hypothetical protein, at 484,298 to 484,690 _05001 MPMX19_05002: MPMX19_05002 - HTH-type transcriptional regulator DmlR, at 484,724 to 485,689 _05002 Position (kb) 483 484 485Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 482.395 kb on + strand, within MPMX19_04999at 482.395 kb on + strand, within MPMX19_04999at 482.395 kb on + strand, within MPMX19_04999at 482.395 kb on + strand, within MPMX19_04999at 482.395 kb on + strand, within MPMX19_04999at 482.395 kb on + strand, within MPMX19_04999at 482.395 kb on + strand, within MPMX19_04999at 482.395 kb on + strand, within MPMX19_04999at 482.395 kb on + strand, within MPMX19_04999at 482.395 kb on + strand, within MPMX19_04999at 482.396 kb on - strand, within MPMX19_04999at 482.396 kb on - strand, within MPMX19_04999at 482.396 kb on - strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.416 kb on + strand, within MPMX19_04999at 482.417 kb on - strand, within MPMX19_04999at 482.417 kb on - strand, within MPMX19_04999at 482.417 kb on - strand, within MPMX19_04999at 482.417 kb on - strand, within MPMX19_04999at 482.417 kb on - strand, within MPMX19_04999at 482.417 kb on - strand, within MPMX19_04999at 482.539 kb on + strand, within MPMX19_04999at 482.539 kb on + strand, within MPMX19_04999at 482.540 kb on - strand, within MPMX19_04999at 482.540 kb on - strand, within MPMX19_04999at 482.540 kb on - strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.626 kb on + strand, within MPMX19_04999at 482.627 kb on - strand, within MPMX19_04999at 482.627 kb on - strand, within MPMX19_04999at 482.627 kb on - strand, within MPMX19_04999at 482.665 kb on + strand, within MPMX19_04999at 482.665 kb on + strand, within MPMX19_04999at 482.665 kb on + strand, within MPMX19_04999at 482.665 kb on + strand, within MPMX19_04999at 482.665 kb on + strand, within MPMX19_04999at 482.666 kb on - strand, within MPMX19_04999at 482.666 kb on - strand, within MPMX19_04999at 482.666 kb on - strand, within MPMX19_04999at 482.666 kb on - strand, within MPMX19_04999at 482.752 kb on + strand, within MPMX19_04999at 482.752 kb on + strand, within MPMX19_04999at 482.752 kb on + strand, within MPMX19_04999at 482.752 kb on + strand, within MPMX19_04999at 482.752 kb on + strand, within MPMX19_04999at 482.752 kb on + strand, within MPMX19_04999at 482.752 kb on + strand, within MPMX19_04999at 482.752 kb on + strand, within MPMX19_04999at 482.752 kb on + strand, within MPMX19_04999at 482.753 kb on - strand, within MPMX19_04999at 482.753 kb on - strand, within MPMX19_04999at 482.753 kb on - strand, within MPMX19_04999at 482.753 kb on - strand, within MPMX19_04999at 482.753 kb on - strand, within MPMX19_04999at 482.809 kb on + strand, within MPMX19_04999at 482.809 kb on + strand, within MPMX19_04999at 482.809 kb on + strand, within MPMX19_04999at 482.983 kb on + strandat 482.983 kb on + strandat 482.983 kb on + strandat 482.983 kb on + strandat 482.983 kb on + strandat 482.984 kb on - strandat 482.984 kb on - strandat 482.984 kb on - strandat 482.984 kb on - strandat 482.984 kb on - strandat 482.984 kb on - strandat 482.984 kb on - strandat 483.004 kb on + strandat 483.004 kb on + strandat 483.004 kb on + strandat 483.004 kb on + strandat 483.005 kb on - strandat 483.005 kb on - strandat 483.049 kb on + strandat 483.049 kb on + strandat 483.049 kb on + strandat 483.049 kb on + strandat 483.049 kb on + strandat 483.050 kb on - strandat 483.050 kb on - strandat 483.050 kb on - strandat 483.050 kb on - strandat 483.050 kb on - strandat 483.050 kb on - strandat 483.050 kb on - strandat 483.050 kb on - strandat 483.133 kb on + strandat 483.134 kb on - strandat 483.154 kb on + strandat 483.154 kb on + strandat 483.155 kb on - strandat 483.155 kb on - strandat 483.155 kb on - strandat 483.550 kb on + strand, within MPMX19_05000at 483.550 kb on + strand, within MPMX19_05000at 483.550 kb on + strand, within MPMX19_05000at 483.550 kb on + strand, within MPMX19_05000at 483.551 kb on - strand, within MPMX19_05000at 483.551 kb on - strand, within MPMX19_05000at 483.760 kb on + strand, within MPMX19_05000at 483.761 kb on - strand, within MPMX19_05000at 483.826 kb on + strand, within MPMX19_05000at 483.826 kb on + strand, within MPMX19_05000at 483.826 kb on + strand, within MPMX19_05000at 483.827 kb on - strand, within MPMX19_05000at 483.827 kb on - strand, within MPMX19_05000at 483.827 kb on - strand, within MPMX19_05000at 483.827 kb on - strand, within MPMX19_05000at 483.827 kb on - strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 484.048 kb on + strand, within MPMX19_05000at 484.049 kb on - strand, within MPMX19_05000at 484.167 kb on + strandat 484.225 kb on - strandat 484.225 kb on - strandat 484.225 kb on - strandat 484.225 kb on - strandat 484.238 kb on + strandat 484.238 kb on + strandat 484.239 kb on - strandat 484.725 kb on + strandat 484.801 kb on - strandat 484.878 kb on + strand, within MPMX19_05002at 484.878 kb on + strand, within MPMX19_05002at 484.878 kb on + strand, within MPMX19_05002at 484.879 kb on - strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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482,395 + MPMX19_04999 0.74 -0.9
482,395 + MPMX19_04999 0.74 -0.7
482,395 + MPMX19_04999 0.74 +0.2
482,395 + MPMX19_04999 0.74 +0.4
482,395 + MPMX19_04999 0.74 -1.0
482,395 + MPMX19_04999 0.74 -0.1
482,395 + MPMX19_04999 0.74 +0.3
482,395 + MPMX19_04999 0.74 +0.0
482,395 + MPMX19_04999 0.74 -2.2
482,395 + MPMX19_04999 0.74 -0.2
482,396 - MPMX19_04999 0.74 +0.9
482,396 - MPMX19_04999 0.74 -1.2
482,396 - MPMX19_04999 0.74 +0.0
482,416 + MPMX19_04999 0.74 -2.9
482,416 + MPMX19_04999 0.74 -0.8
482,416 + MPMX19_04999 0.74 -1.2
482,416 + MPMX19_04999 0.74 +0.3
482,416 + MPMX19_04999 0.74 +0.3
482,416 + MPMX19_04999 0.74 -0.7
482,416 + MPMX19_04999 0.74 -0.2
482,416 + MPMX19_04999 0.74 +0.4
482,416 + MPMX19_04999 0.74 +0.8
482,416 + MPMX19_04999 0.74 -0.4
482,416 + MPMX19_04999 0.74 -1.2
482,416 + MPMX19_04999 0.74 -2.2
482,417 - MPMX19_04999 0.74 +0.0
482,417 - MPMX19_04999 0.74 +1.2
482,417 - MPMX19_04999 0.74 -1.7
482,417 - MPMX19_04999 0.74 -0.6
482,417 - MPMX19_04999 0.74 -0.5
482,417 - MPMX19_04999 0.74 +0.0
482,539 + MPMX19_04999 0.78 -0.4
482,539 + MPMX19_04999 0.78 +0.0
482,540 - MPMX19_04999 0.78 +1.0
482,540 - MPMX19_04999 0.78 +1.0
482,540 - MPMX19_04999 0.78 -2.0
482,626 + MPMX19_04999 0.80 -0.4
482,626 + MPMX19_04999 0.80 +1.0
482,626 + MPMX19_04999 0.80 -0.6
482,626 + MPMX19_04999 0.80 -0.2
482,626 + MPMX19_04999 0.80 +0.1
482,626 + MPMX19_04999 0.80 +0.7
482,626 + MPMX19_04999 0.80 +0.3
482,626 + MPMX19_04999 0.80 -0.4
482,626 + MPMX19_04999 0.80 -0.1
482,626 + MPMX19_04999 0.80 +0.1
482,626 + MPMX19_04999 0.80 +0.8
482,627 - MPMX19_04999 0.80 +0.2
482,627 - MPMX19_04999 0.80 -0.7
482,627 - MPMX19_04999 0.80 +0.1
482,665 + MPMX19_04999 0.82 +0.3
482,665 + MPMX19_04999 0.82 +0.0
482,665 + MPMX19_04999 0.82 -0.3
482,665 + MPMX19_04999 0.82 -1.0
482,665 + MPMX19_04999 0.82 -0.3
482,666 - MPMX19_04999 0.82 -0.2
482,666 - MPMX19_04999 0.82 -0.4
482,666 - MPMX19_04999 0.82 -0.7
482,666 - MPMX19_04999 0.82 +0.7
482,752 + MPMX19_04999 0.84 +0.4
482,752 + MPMX19_04999 0.84 -1.3
482,752 + MPMX19_04999 0.84 +1.0
482,752 + MPMX19_04999 0.84 -0.8
482,752 + MPMX19_04999 0.84 -0.1
482,752 + MPMX19_04999 0.84 -0.8
482,752 + MPMX19_04999 0.84 -0.7
482,752 + MPMX19_04999 0.84 -0.1
482,752 + MPMX19_04999 0.84 +0.2
482,753 - MPMX19_04999 0.84 +0.3
482,753 - MPMX19_04999 0.84 +0.2
482,753 - MPMX19_04999 0.84 -1.9
482,753 - MPMX19_04999 0.84 -0.3
482,753 - MPMX19_04999 0.84 +0.3
482,809 + MPMX19_04999 0.86 +1.3
482,809 + MPMX19_04999 0.86 -1.2
482,809 + MPMX19_04999 0.86 -0.5
482,983 + -0.4
482,983 + -0.9
482,983 + -0.2
482,983 + -1.7
482,983 + +0.8
482,984 - -0.9
482,984 - +0.0
482,984 - -1.0
482,984 - -1.5
482,984 - +0.4
482,984 - +0.0
482,984 - -0.2
483,004 + +1.0
483,004 + +0.2
483,004 + -0.3
483,004 + -0.3
483,005 - -0.7
483,005 - -2.0
483,049 + -1.2
483,049 + -0.1
483,049 + +0.2
483,049 + -1.4
483,049 + -0.3
483,050 - -0.6
483,050 - -0.6
483,050 - -0.2
483,050 - -2.7
483,050 - -0.7
483,050 - -1.2
483,050 - +0.6
483,050 - +0.4
483,133 + +0.0
483,134 - -2.4
483,154 + +0.4
483,154 + -1.8
483,155 - -1.1
483,155 - -0.5
483,155 - -0.4
483,550 + MPMX19_05000 0.29 -2.1
483,550 + MPMX19_05000 0.29 +0.1
483,550 + MPMX19_05000 0.29 -1.4
483,550 + MPMX19_05000 0.29 +0.8
483,551 - MPMX19_05000 0.29 +0.0
483,551 - MPMX19_05000 0.29 +1.0
483,760 + MPMX19_05000 0.54 +0.5
483,761 - MPMX19_05000 0.54 -0.9
483,826 + MPMX19_05000 0.62 -1.2
483,826 + MPMX19_05000 0.62 -0.7
483,826 + MPMX19_05000 0.62 -1.1
483,827 - MPMX19_05000 0.62 -1.2
483,827 - MPMX19_05000 0.62 -0.3
483,827 - MPMX19_05000 0.62 -1.1
483,827 - MPMX19_05000 0.62 -0.3
483,827 - MPMX19_05000 0.62 -0.9
483,946 + MPMX19_05000 0.76 -1.1
483,946 + MPMX19_05000 0.76 -1.4
483,946 + MPMX19_05000 0.76 -0.3
483,946 + MPMX19_05000 0.76 -1.7
483,946 + MPMX19_05000 0.76 +0.6
483,946 + MPMX19_05000 0.76 -1.4
483,946 + MPMX19_05000 0.76 -0.1
483,946 + MPMX19_05000 0.76 +0.6
483,946 + MPMX19_05000 0.76 -0.3
483,947 - MPMX19_05000 0.76 -0.9
483,947 - MPMX19_05000 0.76 -1.0
483,947 - MPMX19_05000 0.76 +0.2
483,947 - MPMX19_05000 0.76 -1.6
483,947 - MPMX19_05000 0.76 -0.2
483,947 - MPMX19_05000 0.76 -0.7
483,947 - MPMX19_05000 0.76 +1.2
483,947 - MPMX19_05000 0.76 -0.8
483,947 - MPMX19_05000 0.76 -0.4
483,947 - MPMX19_05000 0.76 -0.4
483,947 - MPMX19_05000 0.76 -0.4
483,947 - MPMX19_05000 0.76 -1.0
483,947 - MPMX19_05000 0.76 -0.5
483,947 - MPMX19_05000 0.76 +0.9
483,947 - MPMX19_05000 0.76 -1.0
484,048 + MPMX19_05000 0.88 -1.4
484,049 - MPMX19_05000 0.88 +0.7
484,167 + -1.0
484,225 - -1.2
484,225 - +0.3
484,225 - -1.2
484,225 - -0.1
484,238 + -1.4
484,238 + -1.1
484,239 - -1.2
484,725 + +0.2
484,801 - -0.2
484,878 + MPMX19_05002 0.16 -0.4
484,878 + MPMX19_05002 0.16 +0.3
484,878 + MPMX19_05002 0.16 -0.7
484,879 - MPMX19_05002 0.16 +1.6
485,115 + MPMX19_05002 0.40 +1.9
485,115 + MPMX19_05002 0.40 +0.1
485,115 + MPMX19_05002 0.40 -0.8
485,115 + MPMX19_05002 0.40 -1.3
485,115 + MPMX19_05002 0.40 -1.5
485,115 + MPMX19_05002 0.40 +0.0
485,115 + MPMX19_05002 0.40 -0.2
485,115 + MPMX19_05002 0.40 +0.6
485,115 + MPMX19_05002 0.40 -0.7
485,115 + MPMX19_05002 0.40 +0.3
485,116 - MPMX19_05002 0.41 -1.6
485,116 - MPMX19_05002 0.41 +1.2
485,116 - MPMX19_05002 0.41 +0.1
485,116 - MPMX19_05002 0.41 -0.1
485,116 - MPMX19_05002 0.41 -0.4
485,116 - MPMX19_05002 0.41 +0.4
485,116 - MPMX19_05002 0.41 -1.3
485,116 - MPMX19_05002 0.41 -0.3
485,116 - MPMX19_05002 0.41 -0.1

Or see this region's nucleotide sequence