Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04869 and MPMX19_04870 are separated by 132 nucleotides MPMX19_04870 and MPMX19_04871 are separated by 118 nucleotides
MPMX19_04869: MPMX19_04869 - DNA polymerase I, at 310,475 to 313,399
_04869
MPMX19_04870: MPMX19_04870 - Transcriptional regulatory protein OmpR, at 313,532 to 314,317
_04870
MPMX19_04871: MPMX19_04871 - hypothetical protein, at 314,436 to 315,311
_04871
Position (kb) 313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.430 kb on + strand at 313.430 kb on + strand at 313.430 kb on + strand at 313.431 kb on - strand at 313.584 kb on + strand at 313.584 kb on + strand at 313.584 kb on + strand at 313.585 kb on - strand at 313.683 kb on + strand, within MPMX19_04870 at 313.683 kb on + strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.822 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.259 kb on + strand at 314.259 kb on + strand at 314.259 kb on + strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.359 kb on - strand at 314.386 kb on + strand at 314.402 kb on + strand at 314.403 kb on - strand at 314.403 kb on - strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.452 kb on + strand at 314.452 kb on + strand at 314.453 kb on - strand at 314.477 kb on - strand at 314.477 kb on - strand at 314.477 kb on - strand at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.687 kb on - strand, within MPMX19_04871 at 314.687 kb on - strand, within MPMX19_04871 at 314.923 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 315.046 kb on + strand, within MPMX19_04871
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 313,430 + -0.2 313,430 + -1.1 313,430 + -0.2 313,431 - +1.0 313,584 + -0.8 313,584 + +0.0 313,584 + -0.6 313,585 - -0.1 313,683 + MPMX19_04870 0.19 +0.9 313,683 + MPMX19_04870 0.19 +0.1 313,684 - MPMX19_04870 0.19 +0.0 313,684 - MPMX19_04870 0.19 +0.4 313,684 - MPMX19_04870 0.19 +0.4 313,684 - MPMX19_04870 0.19 +0.4 313,776 + MPMX19_04870 0.31 -0.4 313,776 + MPMX19_04870 0.31 -1.0 313,776 + MPMX19_04870 0.31 +0.0 313,776 + MPMX19_04870 0.31 +0.0 313,776 + MPMX19_04870 0.31 -0.3 313,776 + MPMX19_04870 0.31 +1.2 313,776 + MPMX19_04870 0.31 +0.6 313,776 + MPMX19_04870 0.31 -0.4 313,776 + MPMX19_04870 0.31 +0.0 313,777 - MPMX19_04870 0.31 +1.2 313,777 - MPMX19_04870 0.31 -1.0 313,777 - MPMX19_04870 0.31 +0.4 313,777 - MPMX19_04870 0.31 +0.4 313,777 - MPMX19_04870 0.31 +0.3 313,777 - MPMX19_04870 0.31 -0.1 313,777 - MPMX19_04870 0.31 -0.5 313,777 - MPMX19_04870 0.31 +0.0 313,822 + MPMX19_04870 0.37 -0.2 314,025 + MPMX19_04870 0.63 -0.2 314,025 + MPMX19_04870 0.63 -1.2 314,025 + MPMX19_04870 0.63 -1.6 314,025 + MPMX19_04870 0.63 +0.2 314,025 + MPMX19_04870 0.63 -0.1 314,025 + MPMX19_04870 0.63 -1.6 314,025 + MPMX19_04870 0.63 +0.1 314,025 + MPMX19_04870 0.63 +0.4 314,026 - MPMX19_04870 0.63 +0.6 314,026 - MPMX19_04870 0.63 +0.7 314,026 - MPMX19_04870 0.63 +1.6 314,026 - MPMX19_04870 0.63 -0.2 314,026 - MPMX19_04870 0.63 +0.6 314,026 - MPMX19_04870 0.63 -0.7 314,026 - MPMX19_04870 0.63 -0.2 314,026 - MPMX19_04870 0.63 -0.3 314,026 - MPMX19_04870 0.63 +0.5 314,026 - MPMX19_04870 0.63 +1.0 314,026 - MPMX19_04870 0.63 -1.0 314,026 - MPMX19_04870 0.63 -0.9 314,259 + -0.4 314,259 + -1.6 314,259 + +0.1 314,260 - +0.6 314,260 - -0.7 314,260 - +0.0 314,345 + +0.4 314,345 + -0.9 314,345 + +0.3 314,345 + -0.4 314,345 + -1.2 314,346 - +0.7 314,346 - -1.7 314,346 - +0.0 314,346 - -1.1 314,346 - +0.2 314,346 - +1.3 314,353 + +0.0 314,353 + -2.0 314,353 + -0.7 314,353 + -0.2 314,353 + -0.1 314,353 + -1.0 314,353 + +0.3 314,353 + +0.6 314,353 + +0.5 314,354 - -0.7 314,354 - +0.6 314,354 - -0.6 314,354 - +0.4 314,354 - -0.6 314,355 + -1.3 314,355 + -0.8 314,355 + -1.7 314,355 + +0.6 314,355 + -0.6 314,355 + +1.2 314,355 + -0.8 314,355 + -0.6 314,355 + -1.1 314,356 - -0.1 314,356 - -0.1 314,356 - -0.4 314,356 - +0.8 314,356 - -1.4 314,356 - +0.8 314,358 + -0.3 314,358 + -0.2 314,358 + -0.4 314,358 + -1.4 314,358 + +0.4 314,359 - -1.6 314,386 + +0.4 314,402 + -0.4 314,403 - -0.3 314,403 - -0.5 314,437 + -0.6 314,437 + +0.3 314,437 + -0.5 314,437 + -0.5 314,437 + +2.4 314,438 - +0.3 314,438 - -0.6 314,438 - +0.2 314,438 - -1.0 314,438 - -0.6 314,438 - +0.3 314,438 - -1.6 314,452 + -0.3 314,452 + -0.3 314,453 - +0.2 314,477 - -0.1 314,477 - -1.4 314,477 - -0.4 314,587 + MPMX19_04871 0.17 -1.0 314,587 + MPMX19_04871 0.17 +0.6 314,587 + MPMX19_04871 0.17 +0.3 314,587 + MPMX19_04871 0.17 -0.1 314,587 + MPMX19_04871 0.17 -0.1 314,587 + MPMX19_04871 0.17 -1.4 314,587 + MPMX19_04871 0.17 -0.4 314,588 - MPMX19_04871 0.17 -0.6 314,588 - MPMX19_04871 0.17 -1.2 314,588 - MPMX19_04871 0.17 -0.4 314,588 - MPMX19_04871 0.17 -0.1 314,686 + MPMX19_04871 0.29 -0.9 314,686 + MPMX19_04871 0.29 -0.6 314,686 + MPMX19_04871 0.29 -0.5 314,686 + MPMX19_04871 0.29 +0.8 314,686 + MPMX19_04871 0.29 -1.0 314,686 + MPMX19_04871 0.29 +0.2 314,686 + MPMX19_04871 0.29 -2.2 314,687 - MPMX19_04871 0.29 -0.1 314,687 - MPMX19_04871 0.29 -2.9 314,923 + MPMX19_04871 0.56 -0.7 314,932 + MPMX19_04871 0.57 -0.1 314,932 + MPMX19_04871 0.57 +0.1 314,932 + MPMX19_04871 0.57 +0.4 314,932 + MPMX19_04871 0.57 -0.2 314,932 + MPMX19_04871 0.57 -0.6 314,932 + MPMX19_04871 0.57 +0.0 314,932 + MPMX19_04871 0.57 +0.2 314,932 + MPMX19_04871 0.57 -0.8 314,933 - MPMX19_04871 0.57 +1.9 314,933 - MPMX19_04871 0.57 +0.9 314,933 - MPMX19_04871 0.57 -0.5 314,933 - MPMX19_04871 0.57 +0.8 314,933 - MPMX19_04871 0.57 -0.3 314,933 - MPMX19_04871 0.57 +0.4 314,933 - MPMX19_04871 0.57 -0.3 314,933 - MPMX19_04871 0.57 -3.0 314,933 - MPMX19_04871 0.57 -0.1 314,933 - MPMX19_04871 0.57 +0.9 315,046 + MPMX19_04871 0.70 +0.3
Or see this region's nucleotide sequence