Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04550

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04548 and MPMX19_04549 are separated by 47 nucleotidesMPMX19_04549 and MPMX19_04550 are separated by 79 nucleotidesMPMX19_04550 and MPMX19_04551 are separated by 13 nucleotidesMPMX19_04551 and MPMX19_04552 are separated by 62 nucleotides MPMX19_04548: MPMX19_04548 - 4-hydroxy-tetrahydrodipicolinate synthase, at 925,225 to 926,118 _04548 MPMX19_04549: MPMX19_04549 - L-cystine-binding protein FliY, at 926,166 to 926,996 _04549 MPMX19_04550: MPMX19_04550 - L-cystine transport system permease protein YecS, at 927,076 to 927,771 _04550 MPMX19_04551: MPMX19_04551 - HTH-type transcriptional repressor RspR, at 927,785 to 928,474 _04551 MPMX19_04552: MPMX19_04552 - D-hydantoinase, at 928,537 to 929,961 _04552 Position (kb) 927 928Strain fitness (log2 ratio) -2 -1 0 1at 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.163 kb on - strandat 926.163 kb on - strandat 926.163 kb on - strandat 926.163 kb on - strandat 926.409 kb on + strand, within MPMX19_04549at 926.409 kb on + strand, within MPMX19_04549at 926.409 kb on + strand, within MPMX19_04549at 926.409 kb on + strand, within MPMX19_04549at 926.410 kb on - strand, within MPMX19_04549at 926.410 kb on - strand, within MPMX19_04549at 926.410 kb on - strand, within MPMX19_04549at 926.526 kb on + strand, within MPMX19_04549at 926.526 kb on + strand, within MPMX19_04549at 926.527 kb on - strand, within MPMX19_04549at 926.527 kb on - strand, within MPMX19_04549at 926.727 kb on + strand, within MPMX19_04549at 926.727 kb on + strand, within MPMX19_04549at 926.727 kb on + strand, within MPMX19_04549at 926.727 kb on + strand, within MPMX19_04549at 926.727 kb on + strand, within MPMX19_04549at 926.728 kb on - strand, within MPMX19_04549at 926.791 kb on - strand, within MPMX19_04549at 926.922 kb on + strandat 926.922 kb on + strandat 926.923 kb on - strandat 926.923 kb on - strandat 926.923 kb on - strandat 926.923 kb on - strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.113 kb on - strandat 927.113 kb on - strandat 927.113 kb on - strandat 927.113 kb on - strandat 927.128 kb on - strandat 927.128 kb on - strandat 927.230 kb on - strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.259 kb on + strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.260 kb on - strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.310 kb on + strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.311 kb on - strand, within MPMX19_04550at 927.392 kb on - strand, within MPMX19_04550at 927.392 kb on - strand, within MPMX19_04550at 927.392 kb on - strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.490 kb on + strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.491 kb on - strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.674 kb on - strand, within MPMX19_04550at 927.740 kb on - strandat 928.017 kb on - strand, within MPMX19_04551at 928.193 kb on + strand, within MPMX19_04551at 928.194 kb on - strand, within MPMX19_04551at 928.194 kb on - strand, within MPMX19_04551at 928.463 kb on + strandat 928.464 kb on - strandat 928.464 kb on - strandat 928.464 kb on - strandat 928.472 kb on + strandat 928.473 kb on - strandat 928.473 kb on - strandat 928.556 kb on + strandat 928.556 kb on + strandat 928.556 kb on + strandat 928.556 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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926,162 + -0.2
926,162 + +0.6
926,162 + +0.5
926,162 + -1.3
926,162 + -0.4
926,162 + -0.1
926,162 + -0.6
926,162 + -0.2
926,162 + +0.1
926,162 + -0.3
926,162 + -1.3
926,163 - +0.8
926,163 - +0.0
926,163 - -0.5
926,163 - -1.3
926,409 + MPMX19_04549 0.29 -0.4
926,409 + MPMX19_04549 0.29 +1.6
926,409 + MPMX19_04549 0.29 -0.1
926,409 + MPMX19_04549 0.29 -1.0
926,410 - MPMX19_04549 0.29 -0.2
926,410 - MPMX19_04549 0.29 +0.4
926,410 - MPMX19_04549 0.29 +0.1
926,526 + MPMX19_04549 0.43 +0.2
926,526 + MPMX19_04549 0.43 -0.2
926,527 - MPMX19_04549 0.43 +0.9
926,527 - MPMX19_04549 0.43 -0.8
926,727 + MPMX19_04549 0.68 -0.8
926,727 + MPMX19_04549 0.68 -0.4
926,727 + MPMX19_04549 0.68 -2.0
926,727 + MPMX19_04549 0.68 -0.4
926,727 + MPMX19_04549 0.68 +1.2
926,728 - MPMX19_04549 0.68 +0.6
926,791 - MPMX19_04549 0.75 +0.3
926,922 + -0.1
926,922 + -1.1
926,923 - -1.9
926,923 - -2.3
926,923 - -0.2
926,923 - +0.7
927,112 + +0.0
927,112 + +0.0
927,112 + -1.2
927,112 + +0.6
927,112 + +1.0
927,112 + +0.3
927,113 - -0.4
927,113 - -0.8
927,113 - +0.2
927,113 - -1.1
927,128 - -1.2
927,128 - -0.2
927,230 - MPMX19_04550 0.22 -0.6
927,259 + MPMX19_04550 0.26 -0.6
927,259 + MPMX19_04550 0.26 -1.4
927,259 + MPMX19_04550 0.26 -1.2
927,259 + MPMX19_04550 0.26 +0.6
927,259 + MPMX19_04550 0.26 -0.7
927,259 + MPMX19_04550 0.26 -0.2
927,259 + MPMX19_04550 0.26 -0.7
927,259 + MPMX19_04550 0.26 +0.3
927,259 + MPMX19_04550 0.26 +0.0
927,259 + MPMX19_04550 0.26 -1.9
927,260 - MPMX19_04550 0.26 -0.4
927,260 - MPMX19_04550 0.26 -0.7
927,260 - MPMX19_04550 0.26 -0.4
927,260 - MPMX19_04550 0.26 -0.3
927,260 - MPMX19_04550 0.26 -0.1
927,260 - MPMX19_04550 0.26 -0.6
927,260 - MPMX19_04550 0.26 -0.3
927,260 - MPMX19_04550 0.26 -1.2
927,310 + MPMX19_04550 0.34 -1.0
927,310 + MPMX19_04550 0.34 +0.6
927,310 + MPMX19_04550 0.34 -0.2
927,310 + MPMX19_04550 0.34 -1.5
927,310 + MPMX19_04550 0.34 -1.2
927,310 + MPMX19_04550 0.34 -1.3
927,310 + MPMX19_04550 0.34 +0.2
927,310 + MPMX19_04550 0.34 -0.4
927,311 - MPMX19_04550 0.34 -1.3
927,311 - MPMX19_04550 0.34 -0.8
927,311 - MPMX19_04550 0.34 -0.1
927,311 - MPMX19_04550 0.34 +1.0
927,311 - MPMX19_04550 0.34 -0.7
927,311 - MPMX19_04550 0.34 +0.0
927,311 - MPMX19_04550 0.34 -0.1
927,311 - MPMX19_04550 0.34 -1.5
927,392 - MPMX19_04550 0.45 -1.2
927,392 - MPMX19_04550 0.45 +1.6
927,392 - MPMX19_04550 0.45 -1.3
927,490 + MPMX19_04550 0.59 +1.2
927,490 + MPMX19_04550 0.59 -0.7
927,490 + MPMX19_04550 0.59 -0.4
927,490 + MPMX19_04550 0.59 +0.1
927,490 + MPMX19_04550 0.59 -0.1
927,490 + MPMX19_04550 0.59 -0.4
927,490 + MPMX19_04550 0.59 -1.0
927,490 + MPMX19_04550 0.59 -1.6
927,490 + MPMX19_04550 0.59 -2.0
927,490 + MPMX19_04550 0.59 +0.0
927,490 + MPMX19_04550 0.59 -0.7
927,490 + MPMX19_04550 0.59 -1.0
927,490 + MPMX19_04550 0.59 -0.7
927,490 + MPMX19_04550 0.59 -0.7
927,490 + MPMX19_04550 0.59 -0.2
927,491 - MPMX19_04550 0.60 -1.1
927,491 - MPMX19_04550 0.60 +0.4
927,491 - MPMX19_04550 0.60 +0.4
927,491 - MPMX19_04550 0.60 -1.1
927,491 - MPMX19_04550 0.60 -0.0
927,491 - MPMX19_04550 0.60 -0.5
927,491 - MPMX19_04550 0.60 +0.9
927,491 - MPMX19_04550 0.60 +0.0
927,491 - MPMX19_04550 0.60 -2.0
927,491 - MPMX19_04550 0.60 -0.1
927,491 - MPMX19_04550 0.60 +0.0
927,670 + MPMX19_04550 0.85 -0.7
927,670 + MPMX19_04550 0.85 -0.4
927,670 + MPMX19_04550 0.85 +0.8
927,670 + MPMX19_04550 0.85 -2.1
927,670 + MPMX19_04550 0.85 -0.6
927,670 + MPMX19_04550 0.85 -0.2
927,670 + MPMX19_04550 0.85 +1.4
927,670 + MPMX19_04550 0.85 -0.6
927,670 + MPMX19_04550 0.85 -0.7
927,671 - MPMX19_04550 0.85 +0.7
927,671 - MPMX19_04550 0.85 -1.4
927,671 - MPMX19_04550 0.85 +0.9
927,671 - MPMX19_04550 0.85 +0.5
927,673 + MPMX19_04550 0.86 +0.0
927,673 + MPMX19_04550 0.86 -1.1
927,673 + MPMX19_04550 0.86 -1.0
927,673 + MPMX19_04550 0.86 +0.1
927,673 + MPMX19_04550 0.86 -0.5
927,673 + MPMX19_04550 0.86 +1.1
927,673 + MPMX19_04550 0.86 -1.3
927,673 + MPMX19_04550 0.86 -0.7
927,673 + MPMX19_04550 0.86 -2.3
927,673 + MPMX19_04550 0.86 -0.4
927,673 + MPMX19_04550 0.86 -1.2
927,673 + MPMX19_04550 0.86 -0.7
927,674 - MPMX19_04550 0.86 -0.4
927,740 - -0.1
928,017 - MPMX19_04551 0.34 -0.1
928,193 + MPMX19_04551 0.59 -0.6
928,194 - MPMX19_04551 0.59 +1.4
928,194 - MPMX19_04551 0.59 +0.7
928,463 + -1.6
928,464 - +0.3
928,464 - -0.6
928,464 - +0.3
928,472 + -0.5
928,473 - -0.1
928,473 - +0.1
928,556 + -0.9
928,556 + +0.4
928,556 + -0.5
928,556 + -0.9

Or see this region's nucleotide sequence