Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04333

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04331 and MPMX19_04332 are separated by 130 nucleotidesMPMX19_04332 and MPMX19_04333 are separated by 85 nucleotidesMPMX19_04333 and MPMX19_04334 are separated by 288 nucleotides MPMX19_04331: MPMX19_04331 - Exodeoxyribonuclease, at 695,524 to 696,297 _04331 MPMX19_04332: MPMX19_04332 - hypothetical protein, at 696,428 to 697,000 _04332 MPMX19_04333: MPMX19_04333 - tRNA-Ser, at 697,086 to 697,175 _04333 MPMX19_04334: MPMX19_04334 - hypothetical protein, at 697,464 to 698,315 _04334 Position (kb) 697 698Strain fitness (log2 ratio) -2 -1 0 1at 696.086 kb on - strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.116 kb on - strand, within MPMX19_04331at 696.116 kb on - strand, within MPMX19_04331at 696.116 kb on - strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.130 kb on + strand, within MPMX19_04331at 696.334 kb on - strandat 696.362 kb on + strandat 696.362 kb on + strandat 696.362 kb on + strandat 696.362 kb on + strandat 696.363 kb on - strandat 696.363 kb on - strandat 696.363 kb on - strandat 696.363 kb on - strandat 696.418 kb on + strandat 696.419 kb on - strandat 696.419 kb on - strandat 696.419 kb on - strandat 696.419 kb on - strandat 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.833 kb on + strand, within MPMX19_04332at 697.183 kb on + strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.258 kb on + strandat 697.258 kb on + strandat 697.259 kb on - strandat 697.259 kb on - strandat 697.259 kb on - strandat 697.259 kb on - strandat 697.297 kb on - strandat 697.298 kb on + strandat 697.298 kb on + strandat 697.298 kb on + strandat 697.299 kb on - strandat 697.299 kb on - strandat 697.299 kb on - strandat 697.299 kb on - strandat 697.299 kb on - strandat 697.299 kb on - strandat 697.345 kb on + strandat 697.346 kb on - strandat 697.379 kb on - strandat 697.459 kb on - strandat 697.486 kb on - strandat 697.489 kb on + strandat 697.493 kb on + strandat 697.494 kb on - strandat 697.526 kb on - strandat 697.526 kb on - strandat 697.565 kb on + strand, within MPMX19_04334at 697.566 kb on - strand, within MPMX19_04334at 697.566 kb on - strand, within MPMX19_04334at 697.570 kb on + strand, within MPMX19_04334at 697.598 kb on - strand, within MPMX19_04334at 697.707 kb on + strand, within MPMX19_04334at 697.708 kb on - strand, within MPMX19_04334at 697.708 kb on - strand, within MPMX19_04334at 697.710 kb on + strand, within MPMX19_04334at 697.753 kb on + strand, within MPMX19_04334at 697.753 kb on + strand, within MPMX19_04334at 697.753 kb on + strand, within MPMX19_04334at 697.754 kb on - strand, within MPMX19_04334at 697.754 kb on - strand, within MPMX19_04334at 697.796 kb on + strand, within MPMX19_04334at 697.796 kb on + strand, within MPMX19_04334at 697.796 kb on + strand, within MPMX19_04334at 697.797 kb on - strand, within MPMX19_04334at 697.804 kb on - strand, within MPMX19_04334at 697.852 kb on + strand, within MPMX19_04334at 697.853 kb on - strand, within MPMX19_04334at 697.879 kb on + strand, within MPMX19_04334at 697.879 kb on + strand, within MPMX19_04334at 697.879 kb on + strand, within MPMX19_04334at 697.879 kb on + strand, within MPMX19_04334at 697.880 kb on - strand, within MPMX19_04334at 697.880 kb on - strand, within MPMX19_04334at 697.893 kb on - strand, within MPMX19_04334at 697.918 kb on + strand, within MPMX19_04334at 697.918 kb on + strand, within MPMX19_04334at 697.918 kb on + strand, within MPMX19_04334at 697.919 kb on - strand, within MPMX19_04334at 697.919 kb on - strand, within MPMX19_04334at 697.956 kb on + strand, within MPMX19_04334at 697.956 kb on + strand, within MPMX19_04334at 697.957 kb on - strand, within MPMX19_04334at 697.957 kb on - strand, within MPMX19_04334at 697.990 kb on + strand, within MPMX19_04334at 697.990 kb on + strand, within MPMX19_04334at 697.991 kb on - strand, within MPMX19_04334at 697.997 kb on + strand, within MPMX19_04334at 697.997 kb on + strand, within MPMX19_04334at 697.998 kb on - strand, within MPMX19_04334at 697.998 kb on - strand, within MPMX19_04334at 698.008 kb on + strand, within MPMX19_04334at 698.121 kb on + strand, within MPMX19_04334at 698.121 kb on + strand, within MPMX19_04334at 698.122 kb on - strand, within MPMX19_04334at 698.122 kb on - strand, within MPMX19_04334at 698.125 kb on + strand, within MPMX19_04334at 698.125 kb on + strand, within MPMX19_04334at 698.125 kb on + strand, within MPMX19_04334at 698.125 kb on + strand, within MPMX19_04334at 698.125 kb on + strand, within MPMX19_04334at 698.125 kb on + strand, within MPMX19_04334at 698.125 kb on + strand, within MPMX19_04334at 698.126 kb on - strand, within MPMX19_04334at 698.126 kb on - strand, within MPMX19_04334

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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696,086 - MPMX19_04331 0.73 -0.9
696,115 + MPMX19_04331 0.76 -0.6
696,115 + MPMX19_04331 0.76 -0.3
696,115 + MPMX19_04331 0.76 -1.1
696,115 + MPMX19_04331 0.76 +0.1
696,115 + MPMX19_04331 0.76 +0.1
696,116 - MPMX19_04331 0.76 -0.4
696,116 - MPMX19_04331 0.76 +0.7
696,116 - MPMX19_04331 0.76 +0.3
696,117 + MPMX19_04331 0.77 -0.0
696,117 + MPMX19_04331 0.77 -0.5
696,117 + MPMX19_04331 0.77 +0.3
696,117 + MPMX19_04331 0.77 -1.1
696,117 + MPMX19_04331 0.77 +0.5
696,117 + MPMX19_04331 0.77 -1.2
696,117 + MPMX19_04331 0.77 -2.5
696,117 + MPMX19_04331 0.77 -0.2
696,117 + MPMX19_04331 0.77 -0.8
696,117 + MPMX19_04331 0.77 -0.3
696,117 + MPMX19_04331 0.77 -1.6
696,117 + MPMX19_04331 0.77 -0.1
696,118 - MPMX19_04331 0.77 -1.8
696,118 - MPMX19_04331 0.77 -1.7
696,118 - MPMX19_04331 0.77 -0.3
696,118 - MPMX19_04331 0.77 -1.1
696,118 - MPMX19_04331 0.77 +0.1
696,118 - MPMX19_04331 0.77 -1.2
696,130 + MPMX19_04331 0.78 -0.1
696,334 - -0.3
696,362 + -1.1
696,362 + +0.8
696,362 + -0.2
696,362 + +0.4
696,363 - +1.7
696,363 - -0.1
696,363 - -1.3
696,363 - -1.1
696,418 + -0.3
696,419 - -0.3
696,419 - +0.7
696,419 - +0.0
696,419 - -0.4
696,722 + MPMX19_04332 0.51 -1.9
696,722 + MPMX19_04332 0.51 -0.3
696,722 + MPMX19_04332 0.51 +0.7
696,722 + MPMX19_04332 0.51 +0.7
696,722 + MPMX19_04332 0.51 -1.4
696,722 + MPMX19_04332 0.51 +0.7
696,722 + MPMX19_04332 0.51 -1.4
696,722 + MPMX19_04332 0.51 -0.2
696,722 + MPMX19_04332 0.51 -0.7
696,722 + MPMX19_04332 0.51 -0.6
696,722 + MPMX19_04332 0.51 +0.2
696,722 + MPMX19_04332 0.51 +0.7
696,723 - MPMX19_04332 0.51 +0.4
696,723 - MPMX19_04332 0.51 +0.6
696,723 - MPMX19_04332 0.51 -0.7
696,723 - MPMX19_04332 0.51 -0.0
696,723 - MPMX19_04332 0.51 -0.2
696,723 - MPMX19_04332 0.51 +0.1
696,723 - MPMX19_04332 0.51 +1.7
696,723 - MPMX19_04332 0.51 -0.9
696,723 - MPMX19_04332 0.51 +0.1
696,723 - MPMX19_04332 0.51 +0.3
696,723 - MPMX19_04332 0.51 +0.3
696,833 + MPMX19_04332 0.71 +0.8
697,183 + -1.7
697,184 - -0.9
697,184 - -1.2
697,184 - -0.3
697,184 - +0.7
697,184 - -0.2
697,258 + +0.7
697,258 + +0.3
697,259 - -0.8
697,259 - +0.3
697,259 - +1.1
697,259 - -2.0
697,297 - -0.0
697,298 + -1.3
697,298 + -0.3
697,298 + +0.9
697,299 - +0.8
697,299 - -1.7
697,299 - -0.3
697,299 - +0.3
697,299 - -0.2
697,299 - +0.1
697,345 + -0.6
697,346 - -0.7
697,379 - +0.4
697,459 - +0.9
697,486 - -1.4
697,489 + +0.1
697,493 + -0.9
697,494 - +1.3
697,526 - -0.2
697,526 - -0.2
697,565 + MPMX19_04334 0.12 -0.1
697,566 - MPMX19_04334 0.12 -0.7
697,566 - MPMX19_04334 0.12 -0.2
697,570 + MPMX19_04334 0.12 -0.7
697,598 - MPMX19_04334 0.16 -1.3
697,707 + MPMX19_04334 0.29 -0.1
697,708 - MPMX19_04334 0.29 -0.9
697,708 - MPMX19_04334 0.29 -0.4
697,710 + MPMX19_04334 0.29 -2.0
697,753 + MPMX19_04334 0.34 +0.3
697,753 + MPMX19_04334 0.34 -0.5
697,753 + MPMX19_04334 0.34 +0.4
697,754 - MPMX19_04334 0.34 -0.6
697,754 - MPMX19_04334 0.34 +1.7
697,796 + MPMX19_04334 0.39 -1.5
697,796 + MPMX19_04334 0.39 -1.0
697,796 + MPMX19_04334 0.39 -0.5
697,797 - MPMX19_04334 0.39 -0.9
697,804 - MPMX19_04334 0.40 -1.2
697,852 + MPMX19_04334 0.46 +1.3
697,853 - MPMX19_04334 0.46 +0.9
697,879 + MPMX19_04334 0.49 -0.6
697,879 + MPMX19_04334 0.49 -0.4
697,879 + MPMX19_04334 0.49 +0.3
697,879 + MPMX19_04334 0.49 +0.2
697,880 - MPMX19_04334 0.49 +1.1
697,880 - MPMX19_04334 0.49 +0.1
697,893 - MPMX19_04334 0.50 -0.7
697,918 + MPMX19_04334 0.53 -0.9
697,918 + MPMX19_04334 0.53 -0.5
697,918 + MPMX19_04334 0.53 -0.3
697,919 - MPMX19_04334 0.53 -0.4
697,919 - MPMX19_04334 0.53 -0.9
697,956 + MPMX19_04334 0.58 -1.7
697,956 + MPMX19_04334 0.58 -0.7
697,957 - MPMX19_04334 0.58 -0.8
697,957 - MPMX19_04334 0.58 +0.7
697,990 + MPMX19_04334 0.62 +0.1
697,990 + MPMX19_04334 0.62 -0.1
697,991 - MPMX19_04334 0.62 -2.0
697,997 + MPMX19_04334 0.63 +1.1
697,997 + MPMX19_04334 0.63 -1.3
697,998 - MPMX19_04334 0.63 +0.2
697,998 - MPMX19_04334 0.63 -2.4
698,008 + MPMX19_04334 0.64 -2.1
698,121 + MPMX19_04334 0.77 -1.2
698,121 + MPMX19_04334 0.77 -0.7
698,122 - MPMX19_04334 0.77 +0.4
698,122 - MPMX19_04334 0.77 +0.1
698,125 + MPMX19_04334 0.78 +1.2
698,125 + MPMX19_04334 0.78 +0.9
698,125 + MPMX19_04334 0.78 -0.2
698,125 + MPMX19_04334 0.78 +0.4
698,125 + MPMX19_04334 0.78 -1.2
698,125 + MPMX19_04334 0.78 -0.5
698,125 + MPMX19_04334 0.78 +1.3
698,126 - MPMX19_04334 0.78 -0.6
698,126 - MPMX19_04334 0.78 -1.0

Or see this region's nucleotide sequence