Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03406 and MPMX19_03407 are separated by 549 nucleotides MPMX19_03407 and MPMX19_03408 are separated by 113 nucleotides MPMX19_03408 and MPMX19_03409 are separated by 42 nucleotides MPMX19_03409 and MPMX19_03410 are separated by 302 nucleotides
MPMX19_03406: MPMX19_03406 - HTH-type transcriptional regulator HdfR, at 794,474 to 795,430
_03406
MPMX19_03407: MPMX19_03407 - 16S ribosomal RNA, at 795,980 to 797,461
_03407
MPMX19_03408: MPMX19_03408 - tRNA-Ile, at 797,575 to 797,651
_03408
MPMX19_03409: MPMX19_03409 - tRNA-Ala, at 797,694 to 797,769
_03409
MPMX19_03410: MPMX19_03410 - 23S ribosomal RNA, at 798,072 to 800,807
_03410
Position (kb) 795
796
797
798 Strain fitness (log2 ratio) -2
-1
0
1 at 795.121 kb on + strand, within MPMX19_03406 at 795.247 kb on + strand, within MPMX19_03406 at 795.247 kb on + strand, within MPMX19_03406 at 795.247 kb on + strand, within MPMX19_03406 at 795.247 kb on + strand, within MPMX19_03406 at 795.247 kb on + strand, within MPMX19_03406 at 795.247 kb on + strand, within MPMX19_03406 at 795.248 kb on - strand, within MPMX19_03406 at 795.248 kb on - strand, within MPMX19_03406 at 795.248 kb on - strand, within MPMX19_03406 at 795.248 kb on - strand, within MPMX19_03406 at 795.248 kb on - strand, within MPMX19_03406 at 795.374 kb on + strand at 795.374 kb on + strand at 795.374 kb on + strand at 795.374 kb on + strand at 795.375 kb on - strand at 795.375 kb on - strand at 795.375 kb on - strand at 795.375 kb on - strand at 795.375 kb on - strand at 795.375 kb on - strand at 795.559 kb on - strand at 795.559 kb on - strand at 795.559 kb on - strand at 795.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 795,121 + MPMX19_03406 0.68 -0.8 795,247 + MPMX19_03406 0.81 -0.6 795,247 + MPMX19_03406 0.81 -0.9 795,247 + MPMX19_03406 0.81 -0.9 795,247 + MPMX19_03406 0.81 -0.1 795,247 + MPMX19_03406 0.81 +0.9 795,247 + MPMX19_03406 0.81 -0.8 795,248 - MPMX19_03406 0.81 +0.1 795,248 - MPMX19_03406 0.81 -0.3 795,248 - MPMX19_03406 0.81 -0.1 795,248 - MPMX19_03406 0.81 +0.1 795,248 - MPMX19_03406 0.81 -0.3 795,374 + +0.9 795,374 + -2.2 795,374 + +0.4 795,374 + +0.3 795,375 - -0.9 795,375 - +0.1 795,375 - -0.9 795,375 - -0.7 795,375 - -2.1 795,375 - -0.8 795,559 - -1.4 795,559 - -0.5 795,559 - -1.3 795,561 - +0.1
Or see this region's nucleotide sequence