Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03051

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03049 and MPMX19_03050 are separated by 28 nucleotidesMPMX19_03050 and MPMX19_03051 are separated by 50 nucleotidesMPMX19_03051 and MPMX19_03052 are separated by 17 nucleotides MPMX19_03049: MPMX19_03049 - putative protease YhbU, at 313,405 to 314,391 _03049 MPMX19_03050: MPMX19_03050 - hypothetical protein, at 314,420 to 315,331 _03050 MPMX19_03051: MPMX19_03051 - Sec-independent protein translocase protein TatA, at 315,382 to 315,549 _03051 MPMX19_03052: MPMX19_03052 - hypothetical protein, at 315,567 to 316,577 _03052 Position (kb) 315 316Strain fitness (log2 ratio) -2 -1 0 1at 314.390 kb on - strandat 314.390 kb on - strandat 314.486 kb on + strandat 314.486 kb on + strandat 314.487 kb on - strandat 314.487 kb on - strandat 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.967 kb on - strand, within MPMX19_03050at 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.297 kb on - strandat 315.297 kb on - strandat 315.297 kb on - strandat 315.297 kb on - strandat 315.628 kb on + strandat 315.629 kb on - strandat 315.809 kb on - strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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314,390 - +1.1
314,390 - -1.7
314,486 + -2.0
314,486 + -1.7
314,487 - -0.4
314,487 - +0.4
314,792 + MPMX19_03050 0.41 -0.4
314,792 + MPMX19_03050 0.41 -0.7
314,792 + MPMX19_03050 0.41 +0.6
314,792 + MPMX19_03050 0.41 -1.0
314,792 + MPMX19_03050 0.41 -1.9
314,792 + MPMX19_03050 0.41 +0.0
314,792 + MPMX19_03050 0.41 -0.1
314,792 + MPMX19_03050 0.41 +0.4
314,793 - MPMX19_03050 0.41 -1.3
314,793 - MPMX19_03050 0.41 +0.4
314,793 - MPMX19_03050 0.41 -2.6
314,793 - MPMX19_03050 0.41 -1.0
314,967 - MPMX19_03050 0.60 -0.5
315,296 + +0.8
315,296 + -0.8
315,296 + -1.9
315,296 + +0.2
315,296 + +0.5
315,296 + +0.1
315,297 - -1.4
315,297 - -0.4
315,297 - -0.4
315,297 - -0.3
315,628 + -1.1
315,629 - +0.5
315,809 - MPMX19_03052 0.24 +0.6
316,006 + MPMX19_03052 0.43 -1.2
316,006 + MPMX19_03052 0.43 +0.0
316,006 + MPMX19_03052 0.43 +0.8
316,006 + MPMX19_03052 0.43 -0.1
316,006 + MPMX19_03052 0.43 +0.3
316,006 + MPMX19_03052 0.43 -0.1
316,006 + MPMX19_03052 0.43 +0.8
316,006 + MPMX19_03052 0.43 -0.6
316,007 - MPMX19_03052 0.44 -1.1
316,007 - MPMX19_03052 0.44 +1.4
316,007 - MPMX19_03052 0.44 +0.4
316,007 - MPMX19_03052 0.44 -0.1
316,007 - MPMX19_03052 0.44 -0.2
316,007 - MPMX19_03052 0.44 +0.8
316,007 - MPMX19_03052 0.44 -1.0
316,174 + MPMX19_03052 0.60 +1.3
316,174 + MPMX19_03052 0.60 +0.3
316,174 + MPMX19_03052 0.60 -0.1
316,174 + MPMX19_03052 0.60 -0.6
316,174 + MPMX19_03052 0.60 +0.9
316,174 + MPMX19_03052 0.60 +0.7
316,174 + MPMX19_03052 0.60 -0.8
316,174 + MPMX19_03052 0.60 +0.0
316,174 + MPMX19_03052 0.60 -0.1
316,175 - MPMX19_03052 0.60 +0.2
316,175 - MPMX19_03052 0.60 -0.4
316,175 - MPMX19_03052 0.60 +0.3
316,175 - MPMX19_03052 0.60 -0.4
316,175 - MPMX19_03052 0.60 -0.6
316,175 - MPMX19_03052 0.60 -0.3

Or see this region's nucleotide sequence