Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02124

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02123 and MPMX19_02124 are separated by 46 nucleotidesMPMX19_02124 and MPMX19_02125 are separated by 157 nucleotides MPMX19_02123: MPMX19_02123 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 2,220,928 to 2,221,947 _02123 MPMX19_02124: MPMX19_02124 - tRNA N6-adenosine threonylcarbamoyltransferase, at 2,221,994 to 2,223,079 _02124 MPMX19_02125: MPMX19_02125 - Porphobilinogen deaminase, at 2,223,237 to 2,224,175 _02125 Position (kb) 2221 2222 2223 2224Strain fitness (log2 ratio) -2 -1 0 1 2at 2221.078 kb on - strand, within MPMX19_02123at 2221.079 kb on + strand, within MPMX19_02123at 2221.079 kb on + strand, within MPMX19_02123at 2221.079 kb on + strand, within MPMX19_02123at 2221.079 kb on + strand, within MPMX19_02123at 2221.080 kb on - strand, within MPMX19_02123at 2221.080 kb on - strand, within MPMX19_02123at 2221.080 kb on - strand, within MPMX19_02123at 2221.080 kb on - strand, within MPMX19_02123at 2221.080 kb on - strand, within MPMX19_02123at 2221.080 kb on - strand, within MPMX19_02123at 2221.080 kb on - strand, within MPMX19_02123at 2221.080 kb on - strand, within MPMX19_02123at 2221.080 kb on - strand, within MPMX19_02123at 2221.080 kb on - strand, within MPMX19_02123at 2221.404 kb on - strand, within MPMX19_02123at 2221.672 kb on - strand, within MPMX19_02123at 2221.672 kb on - strand, within MPMX19_02123at 2221.778 kb on + strand, within MPMX19_02123at 2221.778 kb on + strand, within MPMX19_02123at 2221.779 kb on - strand, within MPMX19_02123at 2221.779 kb on - strand, within MPMX19_02123at 2221.884 kb on + strandat 2221.885 kb on - strandat 2221.885 kb on - strandat 2221.965 kb on + strandat 2221.966 kb on - strandat 2221.966 kb on - strandat 2221.966 kb on - strandat 2221.980 kb on + strandat 2221.980 kb on + strandat 2221.980 kb on + strandat 2221.980 kb on + strandat 2221.980 kb on + strandat 2221.980 kb on + strandat 2221.980 kb on + strandat 2221.981 kb on - strandat 2221.981 kb on - strandat 2221.981 kb on - strandat 2221.981 kb on - strandat 2221.981 kb on - strandat 2221.981 kb on - strandat 2221.981 kb on - strandat 2221.981 kb on - strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.178 kb on + strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.179 kb on - strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.182 kb on + strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.183 kb on - strandat 2223.224 kb on + strandat 2223.236 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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2,221,078 - MPMX19_02123 0.15 -0.7
2,221,079 + MPMX19_02123 0.15 -0.6
2,221,079 + MPMX19_02123 0.15 -0.5
2,221,079 + MPMX19_02123 0.15 -0.7
2,221,079 + MPMX19_02123 0.15 +0.6
2,221,080 - MPMX19_02123 0.15 -0.7
2,221,080 - MPMX19_02123 0.15 +1.0
2,221,080 - MPMX19_02123 0.15 -1.8
2,221,080 - MPMX19_02123 0.15 +0.0
2,221,080 - MPMX19_02123 0.15 -0.2
2,221,080 - MPMX19_02123 0.15 -0.4
2,221,080 - MPMX19_02123 0.15 -0.6
2,221,080 - MPMX19_02123 0.15 -0.6
2,221,080 - MPMX19_02123 0.15 -0.4
2,221,080 - MPMX19_02123 0.15 +0.4
2,221,404 - MPMX19_02123 0.47 -1.7
2,221,672 - MPMX19_02123 0.73 -0.7
2,221,672 - MPMX19_02123 0.73 -0.4
2,221,778 + MPMX19_02123 0.83 -1.8
2,221,778 + MPMX19_02123 0.83 -0.7
2,221,779 - MPMX19_02123 0.83 -1.5
2,221,779 - MPMX19_02123 0.83 -1.1
2,221,884 + +2.0
2,221,885 - -0.7
2,221,885 - -1.0
2,221,965 + -1.0
2,221,966 - -0.2
2,221,966 - -1.5
2,221,966 - -1.1
2,221,980 + -1.4
2,221,980 + +0.6
2,221,980 + -1.1
2,221,980 + +1.4
2,221,980 + -1.2
2,221,980 + -2.6
2,221,980 + -1.2
2,221,981 - +0.6
2,221,981 - -0.3
2,221,981 - +0.0
2,221,981 - -0.3
2,221,981 - -0.3
2,221,981 - +0.4
2,221,981 - -0.5
2,221,981 - -0.7
2,223,178 + +0.9
2,223,178 + +0.9
2,223,178 + +0.5
2,223,178 + -0.6
2,223,178 + +1.4
2,223,178 + +1.3
2,223,178 + -2.2
2,223,178 + +0.2
2,223,178 + +0.5
2,223,178 + -0.5
2,223,178 + -0.4
2,223,178 + -0.1
2,223,178 + -0.9
2,223,178 + -0.7
2,223,178 + +0.5
2,223,178 + -1.6
2,223,178 + -1.2
2,223,178 + -1.1
2,223,178 + -0.7
2,223,178 + -0.4
2,223,178 + +0.3
2,223,178 + -1.4
2,223,179 - +0.4
2,223,179 - +0.4
2,223,179 - +0.4
2,223,179 - -1.4
2,223,179 - +0.4
2,223,179 - -0.8
2,223,179 - +0.8
2,223,179 - +0.8
2,223,179 - +0.7
2,223,179 - -0.6
2,223,179 - -0.4
2,223,179 - +0.1
2,223,179 - -0.7
2,223,179 - +0.4
2,223,179 - -1.0
2,223,179 - -1.8
2,223,179 - +0.3
2,223,179 - -1.2
2,223,179 - +0.1
2,223,179 - -0.5
2,223,179 - +0.0
2,223,179 - -0.4
2,223,179 - -0.3
2,223,179 - -0.6
2,223,179 - -0.1
2,223,179 - +0.8
2,223,179 - -0.9
2,223,182 + -1.6
2,223,182 + -0.2
2,223,182 + +1.6
2,223,182 + +0.9
2,223,182 + -1.0
2,223,182 + +0.2
2,223,182 + +0.4
2,223,182 + -0.2
2,223,182 + +1.3
2,223,182 + +0.2
2,223,182 + +0.5
2,223,182 + +0.0
2,223,182 + -1.3
2,223,182 + +0.2
2,223,182 + -1.8
2,223,182 + +0.2
2,223,183 - -0.7
2,223,183 - +1.0
2,223,183 - -1.8
2,223,183 - +1.1
2,223,183 - +0.0
2,223,183 - -0.1
2,223,183 - +0.2
2,223,183 - -0.8
2,223,183 - -1.0
2,223,183 - -0.8
2,223,183 - +0.5
2,223,183 - -2.1
2,223,183 - -0.7
2,223,183 - +0.8
2,223,183 - +0.0
2,223,183 - +0.8
2,223,183 - +0.0
2,223,183 - -0.7
2,223,224 + +1.2
2,223,236 + +0.6

Or see this region's nucleotide sequence