Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01807 and MPMX19_01808 are separated by 161 nucleotides MPMX19_01808 and MPMX19_01809 are separated by 36 nucleotides MPMX19_01809 and MPMX19_01810 are separated by 137 nucleotides
MPMX19_01807: MPMX19_01807 - UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase, at 1,889,644 to 1,891,578
_01807
MPMX19_01808: MPMX19_01808 - tRNA-Thr, at 1,891,740 to 1,891,814
_01808
MPMX19_01809: MPMX19_01809 - tRNA-Thr, at 1,891,851 to 1,891,925
_01809
MPMX19_01810: MPMX19_01810 - Chorismate synthase, at 1,892,063 to 1,893,142
_01810
Position (kb)
1891
1892 Strain fitness (log2 ratio)
-1
0
1
2 at 1891.951 kb on + strand at 1892.013 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.020 kb on + strand at 1892.029 kb on + strand at 1892.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 1,891,951 + -0.3 1,892,013 + -0.9 1,892,020 + +0.2 1,892,020 + +0.3 1,892,020 + -1.3 1,892,020 + +2.3 1,892,020 + +0.7 1,892,020 + -0.4 1,892,020 + +0.9 1,892,020 + +0.7 1,892,020 + +0.3 1,892,020 + -0.8 1,892,020 + +1.3 1,892,020 + +0.3 1,892,020 + -0.8 1,892,020 + -0.4 1,892,029 + +0.3 1,892,029 + +0.3
Or see this region's nucleotide sequence