Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01809

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01807 and MPMX19_01808 are separated by 161 nucleotidesMPMX19_01808 and MPMX19_01809 are separated by 36 nucleotidesMPMX19_01809 and MPMX19_01810 are separated by 137 nucleotides MPMX19_01807: MPMX19_01807 - UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase, at 1,889,644 to 1,891,578 _01807 MPMX19_01808: MPMX19_01808 - tRNA-Thr, at 1,891,740 to 1,891,814 _01808 MPMX19_01809: MPMX19_01809 - tRNA-Thr, at 1,891,851 to 1,891,925 _01809 MPMX19_01810: MPMX19_01810 - Chorismate synthase, at 1,892,063 to 1,893,142 _01810 Position (kb) 1891 1892Strain fitness (log2 ratio) -1 0 1 2at 1891.951 kb on + strandat 1892.013 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.020 kb on + strandat 1892.029 kb on + strandat 1892.029 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,891,951 + -0.3
1,892,013 + -0.9
1,892,020 + +0.2
1,892,020 + +0.3
1,892,020 + -1.3
1,892,020 + +2.3
1,892,020 + +0.7
1,892,020 + -0.4
1,892,020 + +0.9
1,892,020 + +0.7
1,892,020 + +0.3
1,892,020 + -0.8
1,892,020 + +1.3
1,892,020 + +0.3
1,892,020 + -0.8
1,892,020 + -0.4
1,892,029 + +0.3
1,892,029 + +0.3

Or see this region's nucleotide sequence