Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00742

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00741 and MPMX19_00742 are separated by 3 nucleotidesMPMX19_00742 and MPMX19_00743 are separated by 151 nucleotidesMPMX19_00743 and MPMX19_00744 are separated by 103 nucleotides MPMX19_00741: MPMX19_00741 - Phosphate acyltransferase, at 760,963 to 762,015 _00741 MPMX19_00742: MPMX19_00742 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 762,019 to 762,990 _00742 MPMX19_00743: MPMX19_00743 - Integration host factor subunit alpha, at 763,142 to 763,474 _00743 MPMX19_00744: MPMX19_00744 - hypothetical protein, at 763,578 to 764,054 _00744 Position (kb) 762 763Strain fitness (log2 ratio) -3 -2 -1 0 1at 761.716 kb on + strand, within MPMX19_00741at 761.967 kb on + strandat 761.969 kb on + strandat 763.004 kb on + strandat 763.005 kb on - strandat 763.005 kb on - strandat 763.005 kb on - strandat 763.058 kb on + strandat 763.058 kb on + strandat 763.058 kb on + strandat 763.058 kb on + strandat 763.059 kb on - strandat 763.059 kb on - strandat 763.059 kb on - strandat 763.059 kb on - strandat 763.596 kb on + strandat 763.597 kb on - strandat 763.597 kb on - strandat 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on + strand, within MPMX19_00744at 763.645 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.646 kb on - strand, within MPMX19_00744at 763.710 kb on + strand, within MPMX19_00744at 763.710 kb on + strand, within MPMX19_00744at 763.710 kb on + strand, within MPMX19_00744at 763.710 kb on + strand, within MPMX19_00744at 763.711 kb on - strand, within MPMX19_00744at 763.761 kb on + strand, within MPMX19_00744at 763.761 kb on + strand, within MPMX19_00744at 763.761 kb on + strand, within MPMX19_00744at 763.761 kb on + strand, within MPMX19_00744at 763.761 kb on + strand, within MPMX19_00744at 763.761 kb on + strand, within MPMX19_00744at 763.761 kb on + strand, within MPMX19_00744at 763.761 kb on + strand, within MPMX19_00744at 763.762 kb on - strand, within MPMX19_00744at 763.762 kb on - strand, within MPMX19_00744at 763.762 kb on - strand, within MPMX19_00744at 763.762 kb on - strand, within MPMX19_00744at 763.762 kb on - strand, within MPMX19_00744at 763.762 kb on - strand, within MPMX19_00744at 763.773 kb on + strand, within MPMX19_00744at 763.773 kb on + strand, within MPMX19_00744at 763.774 kb on - strand, within MPMX19_00744at 763.774 kb on - strand, within MPMX19_00744at 763.774 kb on - strand, within MPMX19_00744at 763.774 kb on - strand, within MPMX19_00744

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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761,716 + MPMX19_00741 0.72 -1.5
761,967 + -0.3
761,969 + -1.9
763,004 + -1.2
763,005 - -1.8
763,005 - -1.1
763,005 - -1.8
763,058 + -0.2
763,058 + +0.0
763,058 + -0.3
763,058 + +0.1
763,059 - +1.4
763,059 - -0.1
763,059 - -0.9
763,059 - -0.2
763,596 + -1.6
763,597 - +0.4
763,597 - -1.1
763,645 + MPMX19_00744 0.14 -0.2
763,645 + MPMX19_00744 0.14 +0.1
763,645 + MPMX19_00744 0.14 +1.3
763,645 + MPMX19_00744 0.14 -1.1
763,645 + MPMX19_00744 0.14 -0.6
763,645 + MPMX19_00744 0.14 +0.4
763,645 + MPMX19_00744 0.14 -0.6
763,645 + MPMX19_00744 0.14 -0.8
763,645 + MPMX19_00744 0.14 +0.1
763,645 + MPMX19_00744 0.14 -0.5
763,645 + MPMX19_00744 0.14 +0.2
763,645 + MPMX19_00744 0.14 +0.4
763,645 + MPMX19_00744 0.14 -0.4
763,645 + MPMX19_00744 0.14 +1.0
763,645 + MPMX19_00744 0.14 -0.3
763,645 + MPMX19_00744 0.14 -0.0
763,645 + MPMX19_00744 0.14 -0.5
763,645 - MPMX19_00744 0.14 -1.2
763,646 - MPMX19_00744 0.14 -1.3
763,646 - MPMX19_00744 0.14 -0.5
763,646 - MPMX19_00744 0.14 -0.3
763,646 - MPMX19_00744 0.14 +0.7
763,646 - MPMX19_00744 0.14 +0.1
763,646 - MPMX19_00744 0.14 -0.4
763,646 - MPMX19_00744 0.14 -0.6
763,646 - MPMX19_00744 0.14 -0.9
763,646 - MPMX19_00744 0.14 -0.2
763,646 - MPMX19_00744 0.14 -2.2
763,646 - MPMX19_00744 0.14 +0.1
763,710 + MPMX19_00744 0.28 +0.5
763,710 + MPMX19_00744 0.28 -0.1
763,710 + MPMX19_00744 0.28 -0.5
763,710 + MPMX19_00744 0.28 +0.0
763,711 - MPMX19_00744 0.28 +0.9
763,761 + MPMX19_00744 0.38 -2.8
763,761 + MPMX19_00744 0.38 -1.1
763,761 + MPMX19_00744 0.38 -0.1
763,761 + MPMX19_00744 0.38 -0.2
763,761 + MPMX19_00744 0.38 +1.1
763,761 + MPMX19_00744 0.38 -1.2
763,761 + MPMX19_00744 0.38 -0.1
763,761 + MPMX19_00744 0.38 -0.5
763,762 - MPMX19_00744 0.39 +0.5
763,762 - MPMX19_00744 0.39 +0.3
763,762 - MPMX19_00744 0.39 -0.1
763,762 - MPMX19_00744 0.39 +0.7
763,762 - MPMX19_00744 0.39 -0.4
763,762 - MPMX19_00744 0.39 -0.4
763,773 + MPMX19_00744 0.41 -0.3
763,773 + MPMX19_00744 0.41 +0.4
763,774 - MPMX19_00744 0.41 +0.3
763,774 - MPMX19_00744 0.41 -0.2
763,774 - MPMX19_00744 0.41 -2.6
763,774 - MPMX19_00744 0.41 -0.5

Or see this region's nucleotide sequence