Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28410

Experiment: Bas58

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntycgV and ychF are separated by 843 nucleotidesychF and pth are separated by 116 nucleotidespth and ychH are separated by 277 nucleotides OKFHMN_28405: ycgV - Putative uncharacterized protein YcgV, at 5,448,733 to 5,450,376 ycgV OKFHMN_28410: ychF - redox-regulated ATPase YchF, at 5,451,220 to 5,452,311 ychF OKFHMN_28415: pth - aminoacyl-tRNA hydrolase, at 5,452,428 to 5,453,012 pth OKFHMN_28420: ychH - stress-induced protein YchH, at 5,453,290 to 5,453,568 ychH Position (kb) 5451 5452 5453Strain fitness (log2 ratio) -1 0 1 2 3at 5450.388 kb on - strandat 5450.390 kb on - strandat 5450.724 kb on + strandat 5451.324 kb on - strandat 5452.482 kb on - strandat 5453.038 kb on - strandat 5453.038 kb on - strandat 5453.238 kb on + strandat 5453.239 kb on - strandat 5453.289 kb on + strandat 5453.289 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
remove
5,450,388 - -0.1
5,450,390 - +1.3
5,450,724 + -1.7
5,451,324 - -1.7
5,452,482 - -0.8
5,453,038 - +3.7
5,453,038 - +1.1
5,453,238 + -0.4
5,453,239 - -0.5
5,453,289 + +0.4
5,453,289 + -0.8

Or see this region's nucleotide sequence