Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28360

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmodD and OKFHMN_28360 are separated by 164 nucleotidesOKFHMN_28360 and fepC are separated by 9 nucleotidesfepC and fepD overlap by 4 nucleotides OKFHMN_28355: modD - Putative pyrophosphorylase ModD, at 5,438,486 to 5,439,340 modD OKFHMN_28360: OKFHMN_28360 - SAM-dependent methyltransferase, at 5,439,505 to 5,440,149 _28360 OKFHMN_28365: fepC - ABC transporter ATP-binding protein, at 5,440,159 to 5,440,917 fepC OKFHMN_28370: fepD - iron ABC transporter permease, at 5,440,914 to 5,441,894 fepD Position (kb) 5439 5440 5441Strain fitness (log2 ratio) -1 0 1at 5438.557 kb on + strandat 5438.859 kb on - strand, within modDat 5439.238 kb on - strand, within modDat 5439.439 kb on + strandat 5439.598 kb on - strand, within OKFHMN_28360at 5440.601 kb on - strand, within fepCat 5440.736 kb on - strand, within fepCat 5440.759 kb on + strand, within fepCat 5440.760 kb on - strand, within fepCat 5441.140 kb on - strand, within fepD

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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5,438,557 + -0.6
5,438,859 - modD OKFHMN_28355 0.44 -0.2
5,439,238 - modD OKFHMN_28355 0.88 -0.5
5,439,439 + +0.1
5,439,598 - OKFHMN_28360 0.14 +1.1
5,440,601 - fepC OKFHMN_28365 0.58 +0.1
5,440,736 - fepC OKFHMN_28365 0.76 +1.1
5,440,759 + fepC OKFHMN_28365 0.79 -0.5
5,440,760 - fepC OKFHMN_28365 0.79 +0.2
5,441,140 - fepD OKFHMN_28370 0.23 -0.2

Or see this region's nucleotide sequence