Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycgJ and OKFHMN_28225 are separated by 102 nucleotides OKFHMN_28225 and OKFHMN_28230 are separated by 70 nucleotides OKFHMN_28230 and ycgL are separated by 11 nucleotides ycgL and ycgM are separated by 71 nucleotides ycgM and ycgN are separated by 91 nucleotides
OKFHMN_28220: ycgJ - Uncharacterized protein YcgJ, at 5,415,388 to 5,415,756
ycgJ
OKFHMN_28225: OKFHMN_28225 - inhibitor of g-type lysozyme, at 5,415,859 to 5,416,260
_28225
OKFHMN_28230: OKFHMN_28230 - hypothetical protein, at 5,416,331 to 5,416,489
_28230
OKFHMN_28235: ycgL - Protein YcgL, at 5,416,501 to 5,416,794
ycgL
OKFHMN_28240: ycgM - fumarylacetoacetate hydrolase family protein, at 5,416,866 to 5,417,525
ycgM
OKFHMN_28245: ycgN - YcgN family cysteine cluster protein, at 5,417,617 to 5,418,063
ycgN
Position (kb) 5416
5417 Strain fitness (log2 ratio) -1
0
1
2
3 at 5415.604 kb on + strand, within ycgJ at 5415.864 kb on + strand at 5416.106 kb on + strand, within OKFHMN_28225 at 5416.110 kb on + strand, within OKFHMN_28225 at 5416.214 kb on - strand, within OKFHMN_28225 at 5416.264 kb on + strand at 5416.265 kb on - strand at 5416.305 kb on + strand at 5416.384 kb on + strand, within OKFHMN_28230 at 5416.388 kb on + strand, within OKFHMN_28230 at 5416.389 kb on - strand, within OKFHMN_28230 at 5416.463 kb on - strand, within OKFHMN_28230 at 5416.544 kb on - strand, within ycgL at 5416.785 kb on + strand at 5416.869 kb on + strand at 5416.916 kb on + strand at 5416.921 kb on + strand at 5416.937 kb on + strand, within ycgM at 5416.941 kb on + strand, within ycgM at 5416.955 kb on + strand, within ycgM at 5417.320 kb on + strand, within ycgM at 5417.391 kb on - strand, within ycgM at 5417.582 kb on - strand at 5417.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 5,415,604 + ycgJ OKFHMN_28220 0.59 -0.3 5,415,864 + -0.3 5,416,106 + OKFHMN_28225 0.61 +0.3 5,416,110 + OKFHMN_28225 0.62 -0.6 5,416,214 - OKFHMN_28225 0.88 +0.6 5,416,264 + -0.1 5,416,265 - -0.7 5,416,305 + +0.1 5,416,384 + OKFHMN_28230 0.33 +0.7 5,416,388 + OKFHMN_28230 0.36 +1.1 5,416,389 - OKFHMN_28230 0.36 +0.1 5,416,463 - OKFHMN_28230 0.83 +0.9 5,416,544 - ycgL OKFHMN_28235 0.15 -0.2 5,416,785 + +0.3 5,416,869 + -0.1 5,416,916 + +0.1 5,416,921 + -0.9 5,416,937 + ycgM OKFHMN_28240 0.11 -0.8 5,416,941 + ycgM OKFHMN_28240 0.11 -1.6 5,416,955 + ycgM OKFHMN_28240 0.13 +0.6 5,417,320 + ycgM OKFHMN_28240 0.69 +3.1 5,417,391 - ycgM OKFHMN_28240 0.80 +0.4 5,417,582 - -0.1 5,417,627 + +0.5
Or see this region's nucleotide sequence