Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydjF and OKFHMN_26780 are separated by 117 nucleotides OKFHMN_26780 and OKFHMN_26785 overlap by 26 nucleotides OKFHMN_26785 and tnp-IS629 overlap by 1 nucleotides tnp-IS629 and ydjE are separated by 152 nucleotides
OKFHMN_26775: ydjF - Uncharacterized HTH-type transcriptional regulator YdjF, at 5,153,948 to 5,154,706
ydjF
OKFHMN_26780: OKFHMN_26780 - Insertion sequence 2 OrfA protein, at 5,154,824 to 5,154,994
_26780
OKFHMN_26785: OKFHMN_26785 - IS3 family transposase, at 5,154,969 to 5,155,856
_26785
OKFHMN_26790: tnp-IS629 - IS3 family IS629 transposase, at 5,155,856 to 5,156,182
tnp-IS629
OKFHMN_26795: ydjE - Inner membrane metabolite transport protein YdjE, at 5,156,335 to 5,157,495
ydjE
Position (kb) 5154
5155
5156 Strain fitness (log2 ratio) -1
0
1 at 5154.145 kb on + strand, within ydjF at 5154.155 kb on + strand, within ydjF at 5154.226 kb on + strand, within ydjF at 5154.253 kb on + strand, within ydjF at 5154.256 kb on + strand, within ydjF at 5154.381 kb on + strand, within ydjF at 5154.616 kb on + strand, within ydjF at 5154.625 kb on + strand, within ydjF at 5154.629 kb on + strand, within ydjF at 5154.633 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 5,154,145 + ydjF OKFHMN_26775 0.26 +0.6 5,154,155 + ydjF OKFHMN_26775 0.27 -1.6 5,154,226 + ydjF OKFHMN_26775 0.37 -1.2 5,154,253 + ydjF OKFHMN_26775 0.40 +0.4 5,154,256 + ydjF OKFHMN_26775 0.41 +0.4 5,154,381 + ydjF OKFHMN_26775 0.57 -0.8 5,154,616 + ydjF OKFHMN_26775 0.88 -0.3 5,154,625 + ydjF OKFHMN_26775 0.89 +0.8 5,154,629 + ydjF OKFHMN_26775 0.90 -0.2 5,154,633 + -0.3
Or see this region's nucleotide sequence