Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26115

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmotA and motB overlap by 4 nucleotidesmotB and cheA are separated by 4 nucleotides OKFHMN_26110: motA - flagellar motor stator protein MotA, at 5,031,352 to 5,032,239 motA OKFHMN_26115: motB - flagellar motor protein MotB, at 5,032,236 to 5,033,162 motB OKFHMN_26120: cheA - chemotaxis protein CheA, at 5,033,167 to 5,035,131 cheA Position (kb) 5032 5033 5034Strain fitness (log2 ratio) -1 0 1 2at 5031.358 kb on - strandat 5031.363 kb on - strandat 5031.436 kb on + strandat 5031.574 kb on + strand, within motAat 5031.574 kb on + strand, within motAat 5031.575 kb on - strand, within motAat 5031.688 kb on + strand, within motAat 5031.880 kb on - strand, within motAat 5032.092 kb on + strand, within motAat 5032.093 kb on - strand, within motAat 5032.334 kb on + strand, within motBat 5032.334 kb on + strand, within motBat 5032.718 kb on + strand, within motBat 5032.942 kb on + strand, within motBat 5033.089 kb on + strandat 5033.178 kb on + strandat 5033.428 kb on - strand, within cheAat 5033.518 kb on + strand, within cheAat 5033.829 kb on + strand, within cheAat 5034.157 kb on + strand, within cheAat 5034.157 kb on + strand, within cheAat 5034.157 kb on + strand, within cheA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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5,031,358 - +0.4
5,031,363 - -0.5
5,031,436 + -0.7
5,031,574 + motA OKFHMN_26110 0.25 +0.3
5,031,574 + motA OKFHMN_26110 0.25 -0.2
5,031,575 - motA OKFHMN_26110 0.25 +0.1
5,031,688 + motA OKFHMN_26110 0.38 -0.0
5,031,880 - motA OKFHMN_26110 0.59 -0.3
5,032,092 + motA OKFHMN_26110 0.83 -0.2
5,032,093 - motA OKFHMN_26110 0.83 +0.3
5,032,334 + motB OKFHMN_26115 0.11 -0.7
5,032,334 + motB OKFHMN_26115 0.11 -1.1
5,032,718 + motB OKFHMN_26115 0.52 -0.0
5,032,942 + motB OKFHMN_26115 0.76 -1.4
5,033,089 + +0.3
5,033,178 + +0.0
5,033,428 - cheA OKFHMN_26120 0.13 -0.4
5,033,518 + cheA OKFHMN_26120 0.18 +0.3
5,033,829 + cheA OKFHMN_26120 0.34 -1.0
5,034,157 + cheA OKFHMN_26120 0.50 +2.0
5,034,157 + cheA OKFHMN_26120 0.50 +0.7
5,034,157 + cheA OKFHMN_26120 0.50 +1.3

Or see this region's nucleotide sequence