Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25595

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_25585 and yedJ are separated by 970 nucleotidesyedJ and dcm are separated by 66 nucleotides OKFHMN_25585: OKFHMN_25585 - Putative outer membrane protein, at 4,951,889 to 4,952,533 _25585 OKFHMN_25595: yedJ - phosphohydrolase, at 4,953,504 to 4,954,199 yedJ OKFHMN_25600: dcm - DNA-cytosine methyltransferase, at 4,954,266 to 4,955,684 dcm Position (kb) 4953 4954 4955Strain fitness (log2 ratio) -1 0 1at 4953.057 kb on + strandat 4953.128 kb on + strandat 4953.277 kb on + strandat 4953.472 kb on + strandat 4953.511 kb on + strandat 4953.512 kb on - strandat 4954.045 kb on + strand, within yedJat 4954.174 kb on + strandat 4954.225 kb on + strandat 4954.348 kb on - strandat 4954.348 kb on - strandat 4954.518 kb on + strand, within dcmat 4954.745 kb on + strand, within dcm

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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4,953,057 + -0.3
4,953,128 + +1.0
4,953,277 + +1.0
4,953,472 + +0.3
4,953,511 + -0.2
4,953,512 - -0.6
4,954,045 + yedJ OKFHMN_25595 0.78 -0.7
4,954,174 + +1.3
4,954,225 + +0.3
4,954,348 - +1.3
4,954,348 - -1.1
4,954,518 + dcm OKFHMN_25600 0.18 +0.6
4,954,745 + dcm OKFHMN_25600 0.34 -0.7

Or see this region's nucleotide sequence