Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24845

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_24825 and OKFHMN_24830 are separated by 136 nucleotidesOKFHMN_24830 and OKFHMN_24835 are separated by 40 nucleotidesOKFHMN_24835 and OKFHMN_24840 are separated by 76 nucleotidesOKFHMN_24840 and rrrD overlap by 1 nucleotidesrrrD and OKFHMN_24850 overlap by 4 nucleotidesOKFHMN_24850 and OKFHMN_24855 are separated by 202 nucleotides OKFHMN_24825: OKFHMN_24825 - sialate O-acetylesterase, at 4,823,971 to 4,825,908 _24825 OKFHMN_24830: OKFHMN_24830 - DUF1378 domain-containing protein, at 4,826,045 to 4,826,224 _24830 OKFHMN_24835: OKFHMN_24835 - DUF826 domain-containing protein, at 4,826,265 to 4,826,537 _24835 OKFHMN_24840: OKFHMN_24840 - holin, at 4,826,614 to 4,826,829 _24840 OKFHMN_24845: rrrD - lysozyme RrrD, at 4,826,829 to 4,827,326 rrrD OKFHMN_24850: OKFHMN_24850 - lysis protein, at 4,827,323 to 4,827,760 _24850 OKFHMN_24855: OKFHMN_24855 - DNA-binding protein, at 4,827,963 to 4,828,460 _24855 Position (kb) 4826 4827 4828Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4826.450 kb on + strand, within OKFHMN_24835at 4826.618 kb on - strandat 4827.359 kb on - strandat 4827.359 kb on - strandat 4827.571 kb on + strand, within OKFHMN_24850at 4827.652 kb on + strand, within OKFHMN_24850at 4827.652 kb on + strand, within OKFHMN_24850at 4827.653 kb on - strand, within OKFHMN_24850at 4827.674 kb on + strand, within OKFHMN_24850at 4827.706 kb on - strand, within OKFHMN_24850at 4827.951 kb on + strandat 4827.955 kb on + strandat 4827.963 kb on - strandat 4828.032 kb on - strand, within OKFHMN_24855at 4828.032 kb on - strand, within OKFHMN_24855at 4828.078 kb on - strand, within OKFHMN_24855at 4828.240 kb on - strand, within OKFHMN_24855at 4828.257 kb on + strand, within OKFHMN_24855at 4828.292 kb on - strand, within OKFHMN_24855

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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4,826,450 + OKFHMN_24835 0.68 -0.9
4,826,618 - +0.2
4,827,359 - -1.0
4,827,359 - +1.9
4,827,571 + OKFHMN_24850 0.57 +0.2
4,827,652 + OKFHMN_24850 0.75 +0.1
4,827,652 + OKFHMN_24850 0.75 +0.2
4,827,653 - OKFHMN_24850 0.75 +0.8
4,827,674 + OKFHMN_24850 0.80 -1.1
4,827,706 - OKFHMN_24850 0.87 -0.7
4,827,951 + +1.7
4,827,955 + -1.8
4,827,963 - +2.8
4,828,032 - OKFHMN_24855 0.14 +0.3
4,828,032 - OKFHMN_24855 0.14 -0.3
4,828,078 - OKFHMN_24855 0.23 -0.3
4,828,240 - OKFHMN_24855 0.56 +0.0
4,828,257 + OKFHMN_24855 0.59 -0.6
4,828,292 - OKFHMN_24855 0.66 +0.6

Or see this region's nucleotide sequence