Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt alkA and mASE1 are separated by 100 nucleotides mASE1 and OKFHMN_24265 overlap by 23 nucleotides OKFHMN_24265 and udk are separated by 317 nucleotides
OKFHMN_24255: alkA - DNA-3-methyladenine glycosylase 2, at 4,732,414 to 4,733,262
alkA
OKFHMN_24260: mASE1 - diguanylate cyclase, at 4,733,363 to 4,736,170
mASE1
OKFHMN_24265: OKFHMN_24265 - Putative diguanylate cyclase YegE, at 4,736,148 to 4,736,681
_24265
OKFHMN_24270: udk - uridine kinase, at 4,736,999 to 4,737,640
udk
Position (kb) 4733
4734
4735
4736
4737 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4732.419 kb on + strand at 4732.584 kb on + strand, within alkA at 4732.595 kb on + strand, within alkA at 4732.867 kb on + strand, within alkA at 4732.867 kb on + strand, within alkA at 4732.868 kb on - strand, within alkA at 4733.128 kb on + strand, within alkA at 4733.224 kb on - strand at 4733.312 kb on - strand at 4733.387 kb on - strand at 4733.566 kb on + strand at 4733.585 kb on + strand at 4733.586 kb on - strand at 4733.607 kb on + strand at 4733.751 kb on - strand, within mASE1 at 4733.753 kb on + strand, within mASE1 at 4733.852 kb on + strand, within mASE1 at 4733.904 kb on - strand, within mASE1 at 4733.999 kb on - strand, within mASE1 at 4734.154 kb on - strand, within mASE1 at 4734.193 kb on - strand, within mASE1 at 4734.302 kb on - strand, within mASE1 at 4734.309 kb on + strand, within mASE1 at 4734.310 kb on - strand, within mASE1 at 4734.329 kb on - strand, within mASE1 at 4734.331 kb on + strand, within mASE1 at 4734.332 kb on - strand, within mASE1 at 4734.332 kb on - strand, within mASE1 at 4734.332 kb on - strand, within mASE1 at 4734.433 kb on + strand, within mASE1 at 4734.433 kb on + strand, within mASE1 at 4734.508 kb on + strand, within mASE1 at 4734.577 kb on + strand, within mASE1 at 4734.643 kb on - strand, within mASE1 at 4734.705 kb on - strand, within mASE1 at 4734.706 kb on + strand, within mASE1 at 4734.706 kb on + strand, within mASE1 at 4734.740 kb on - strand, within mASE1 at 4734.744 kb on + strand, within mASE1 at 4734.840 kb on - strand, within mASE1 at 4734.862 kb on + strand, within mASE1 at 4734.863 kb on - strand, within mASE1 at 4734.894 kb on - strand, within mASE1 at 4734.944 kb on - strand, within mASE1 at 4735.431 kb on - strand, within mASE1 at 4735.460 kb on - strand, within mASE1 at 4735.465 kb on - strand, within mASE1 at 4735.540 kb on - strand, within mASE1 at 4735.818 kb on + strand, within mASE1 at 4735.818 kb on + strand, within mASE1 at 4735.818 kb on + strand, within mASE1 at 4735.819 kb on - strand, within mASE1 at 4735.819 kb on - strand, within mASE1 at 4735.893 kb on + strand at 4735.893 kb on + strand at 4736.050 kb on - strand at 4736.338 kb on + strand, within OKFHMN_24265 at 4736.358 kb on + strand, within OKFHMN_24265 at 4736.359 kb on - strand, within OKFHMN_24265 at 4736.656 kb on - strand at 4736.656 kb on - strand at 4736.659 kb on - strand at 4736.734 kb on + strand at 4736.828 kb on + strand at 4736.830 kb on + strand at 4736.845 kb on + strand at 4736.846 kb on - strand at 4736.969 kb on - strand at 4736.996 kb on + strand at 4736.996 kb on + strand at 4736.997 kb on - strand at 4737.093 kb on + strand, within udk
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,732,419 + -0.3 4,732,584 + alkA OKFHMN_24255 0.20 -0.1 4,732,595 + alkA OKFHMN_24255 0.21 -0.1 4,732,867 + alkA OKFHMN_24255 0.53 -0.3 4,732,867 + alkA OKFHMN_24255 0.53 -1.2 4,732,868 - alkA OKFHMN_24255 0.53 +0.2 4,733,128 + alkA OKFHMN_24255 0.84 +1.2 4,733,224 - +0.7 4,733,312 - +1.2 4,733,387 - -1.6 4,733,566 + +0.7 4,733,585 + +0.4 4,733,586 - +0.6 4,733,607 + +1.4 4,733,751 - mASE1 OKFHMN_24260 0.14 -0.4 4,733,753 + mASE1 OKFHMN_24260 0.14 -2.2 4,733,852 + mASE1 OKFHMN_24260 0.17 +0.4 4,733,904 - mASE1 OKFHMN_24260 0.19 -1.6 4,733,999 - mASE1 OKFHMN_24260 0.23 +0.4 4,734,154 - mASE1 OKFHMN_24260 0.28 +2.8 4,734,193 - mASE1 OKFHMN_24260 0.30 +0.4 4,734,302 - mASE1 OKFHMN_24260 0.33 -0.2 4,734,309 + mASE1 OKFHMN_24260 0.34 -1.2 4,734,310 - mASE1 OKFHMN_24260 0.34 -0.1 4,734,329 - mASE1 OKFHMN_24260 0.34 -0.0 4,734,331 + mASE1 OKFHMN_24260 0.34 -0.2 4,734,332 - mASE1 OKFHMN_24260 0.35 -1.3 4,734,332 - mASE1 OKFHMN_24260 0.35 -1.5 4,734,332 - mASE1 OKFHMN_24260 0.35 +0.9 4,734,433 + mASE1 OKFHMN_24260 0.38 -0.1 4,734,433 + mASE1 OKFHMN_24260 0.38 +0.8 4,734,508 + mASE1 OKFHMN_24260 0.41 -0.5 4,734,577 + mASE1 OKFHMN_24260 0.43 -1.8 4,734,643 - mASE1 OKFHMN_24260 0.46 -0.9 4,734,705 - mASE1 OKFHMN_24260 0.48 +1.2 4,734,706 + mASE1 OKFHMN_24260 0.48 +1.2 4,734,706 + mASE1 OKFHMN_24260 0.48 -0.1 4,734,740 - mASE1 OKFHMN_24260 0.49 -0.8 4,734,744 + mASE1 OKFHMN_24260 0.49 +1.2 4,734,840 - mASE1 OKFHMN_24260 0.53 +0.2 4,734,862 + mASE1 OKFHMN_24260 0.53 +0.5 4,734,863 - mASE1 OKFHMN_24260 0.53 +0.1 4,734,894 - mASE1 OKFHMN_24260 0.55 +0.2 4,734,944 - mASE1 OKFHMN_24260 0.56 -0.4 4,735,431 - mASE1 OKFHMN_24260 0.74 +0.7 4,735,460 - mASE1 OKFHMN_24260 0.75 +0.8 4,735,465 - mASE1 OKFHMN_24260 0.75 -0.3 4,735,540 - mASE1 OKFHMN_24260 0.78 +0.4 4,735,818 + mASE1 OKFHMN_24260 0.87 -0.0 4,735,818 + mASE1 OKFHMN_24260 0.87 +0.9 4,735,818 + mASE1 OKFHMN_24260 0.87 +0.8 4,735,819 - mASE1 OKFHMN_24260 0.87 -0.0 4,735,819 - mASE1 OKFHMN_24260 0.87 +0.2 4,735,893 + +0.5 4,735,893 + -0.3 4,736,050 - +0.4 4,736,338 + OKFHMN_24265 0.36 -0.1 4,736,358 + OKFHMN_24265 0.39 +0.8 4,736,359 - OKFHMN_24265 0.40 +0.8 4,736,656 - +1.2 4,736,656 - +0.4 4,736,659 - +0.5 4,736,734 + -1.0 4,736,828 + -1.8 4,736,830 + -1.1 4,736,845 + -0.3 4,736,846 - +0.2 4,736,969 - -1.1 4,736,996 + +0.7 4,736,996 + -0.3 4,736,997 - +1.8 4,737,093 + udk OKFHMN_24270 0.15 -1.5
Or see this region's nucleotide sequence