Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhmR and rhmD are separated by 14 nucleotides rhmD and OKFHMN_23030 are separated by 56 nucleotides OKFHMN_23030 and OKFHMN_23035 overlap by 47 nucleotides
OKFHMN_23020: rhmR - Uncharacterized HTH-type transcriptional regulator RhmR, at 4,481,945 to 4,482,727
rhmR
OKFHMN_23025: rhmD - L-rhamnonate dehydratase, at 4,482,742 to 4,483,947
rhmD
OKFHMN_23030: OKFHMN_23030 - MFS transporter, at 4,484,004 to 4,484,549
_23030
OKFHMN_23035: OKFHMN_23035 - MFS transporter, at 4,484,503 to 4,485,294
_23035
Position (kb) 4482
4483
4484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4481.928 kb on + strand at 4481.929 kb on - strand at 4482.022 kb on + strand at 4482.058 kb on + strand, within rhmR at 4482.071 kb on + strand, within rhmR at 4482.072 kb on - strand, within rhmR at 4482.072 kb on - strand, within rhmR at 4482.109 kb on + strand, within rhmR at 4482.243 kb on + strand, within rhmR at 4482.363 kb on + strand, within rhmR at 4482.368 kb on - strand, within rhmR at 4482.410 kb on - strand, within rhmR at 4482.584 kb on - strand, within rhmR at 4482.676 kb on + strand at 4482.725 kb on + strand at 4483.011 kb on + strand, within rhmD at 4483.106 kb on - strand, within rhmD at 4483.240 kb on + strand, within rhmD at 4483.432 kb on + strand, within rhmD at 4483.507 kb on + strand, within rhmD at 4483.655 kb on + strand, within rhmD at 4483.864 kb on - strand at 4483.884 kb on + strand at 4483.987 kb on - strand at 4483.991 kb on + strand at 4483.992 kb on - strand at 4484.064 kb on - strand, within OKFHMN_23030 at 4484.076 kb on + strand, within OKFHMN_23030 at 4484.076 kb on + strand, within OKFHMN_23030 at 4484.077 kb on - strand, within OKFHMN_23030 at 4484.127 kb on + strand, within OKFHMN_23030 at 4484.151 kb on - strand, within OKFHMN_23030 at 4484.161 kb on - strand, within OKFHMN_23030 at 4484.191 kb on + strand, within OKFHMN_23030 at 4484.191 kb on + strand, within OKFHMN_23030 at 4484.191 kb on + strand, within OKFHMN_23030 at 4484.191 kb on + strand, within OKFHMN_23030 at 4484.191 kb on + strand, within OKFHMN_23030 at 4484.192 kb on - strand, within OKFHMN_23030 at 4484.192 kb on - strand, within OKFHMN_23030 at 4484.192 kb on - strand, within OKFHMN_23030 at 4484.193 kb on + strand, within OKFHMN_23030 at 4484.329 kb on + strand, within OKFHMN_23030 at 4484.375 kb on + strand, within OKFHMN_23030 at 4484.382 kb on + strand, within OKFHMN_23030 at 4484.426 kb on + strand, within OKFHMN_23030 at 4484.439 kb on + strand, within OKFHMN_23030 at 4484.439 kb on + strand, within OKFHMN_23030 at 4484.439 kb on + strand, within OKFHMN_23030 at 4484.439 kb on + strand, within OKFHMN_23030 at 4484.440 kb on - strand, within OKFHMN_23030 at 4484.922 kb on + strand, within OKFHMN_23035
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,481,928 + -0.6 4,481,929 - +0.2 4,482,022 + +0.0 4,482,058 + rhmR OKFHMN_23020 0.14 -1.2 4,482,071 + rhmR OKFHMN_23020 0.16 -1.0 4,482,072 - rhmR OKFHMN_23020 0.16 -0.9 4,482,072 - rhmR OKFHMN_23020 0.16 +0.2 4,482,109 + rhmR OKFHMN_23020 0.21 +0.2 4,482,243 + rhmR OKFHMN_23020 0.38 +0.8 4,482,363 + rhmR OKFHMN_23020 0.53 -0.2 4,482,368 - rhmR OKFHMN_23020 0.54 +0.1 4,482,410 - rhmR OKFHMN_23020 0.59 -1.8 4,482,584 - rhmR OKFHMN_23020 0.82 +0.1 4,482,676 + +1.0 4,482,725 + -0.0 4,483,011 + rhmD OKFHMN_23025 0.22 +0.3 4,483,106 - rhmD OKFHMN_23025 0.30 +0.0 4,483,240 + rhmD OKFHMN_23025 0.41 +0.0 4,483,432 + rhmD OKFHMN_23025 0.57 -0.2 4,483,507 + rhmD OKFHMN_23025 0.63 +1.3 4,483,655 + rhmD OKFHMN_23025 0.76 +0.2 4,483,864 - +0.4 4,483,884 + -0.3 4,483,987 - +0.6 4,483,991 + +0.3 4,483,992 - +0.3 4,484,064 - OKFHMN_23030 0.11 +0.2 4,484,076 + OKFHMN_23030 0.13 -0.6 4,484,076 + OKFHMN_23030 0.13 +0.1 4,484,077 - OKFHMN_23030 0.13 -0.9 4,484,127 + OKFHMN_23030 0.23 -1.0 4,484,151 - OKFHMN_23030 0.27 +1.0 4,484,161 - OKFHMN_23030 0.29 -0.2 4,484,191 + OKFHMN_23030 0.34 -0.5 4,484,191 + OKFHMN_23030 0.34 -1.6 4,484,191 + OKFHMN_23030 0.34 +0.4 4,484,191 + OKFHMN_23030 0.34 -1.2 4,484,191 + OKFHMN_23030 0.34 -1.0 4,484,192 - OKFHMN_23030 0.34 +0.3 4,484,192 - OKFHMN_23030 0.34 +1.3 4,484,192 - OKFHMN_23030 0.34 +1.3 4,484,193 + OKFHMN_23030 0.35 +0.1 4,484,329 + OKFHMN_23030 0.60 +0.0 4,484,375 + OKFHMN_23030 0.68 -0.4 4,484,382 + OKFHMN_23030 0.69 +0.1 4,484,426 + OKFHMN_23030 0.77 -0.3 4,484,439 + OKFHMN_23030 0.80 -0.2 4,484,439 + OKFHMN_23030 0.80 +1.7 4,484,439 + OKFHMN_23030 0.80 +0.2 4,484,439 + OKFHMN_23030 0.80 +1.9 4,484,440 - OKFHMN_23030 0.80 -0.1 4,484,922 + OKFHMN_23035 0.53 -1.2
Or see this region's nucleotide sequence