Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22905

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnuoN and yfbM are separated by 66 nucleotides OKFHMN_22900: nuoN - NADH-quinone oxidoreductase subunit NuoN, at 4,457,061 to 4,458,518 nuoN OKFHMN_22905: yfbM - Protein YfbM, at 4,458,585 to 4,459,088 yfbM Position (kb) 4458 4459 4460Strain fitness (log2 ratio) -2 -1 0 1 2at 4457.593 kb on - strand, within nuoNat 4457.838 kb on + strand, within nuoNat 4457.966 kb on + strand, within nuoNat 4457.967 kb on - strand, within nuoNat 4457.967 kb on - strand, within nuoNat 4458.045 kb on + strand, within nuoNat 4458.328 kb on - strand, within nuoNat 4458.330 kb on + strand, within nuoNat 4458.330 kb on + strand, within nuoNat 4458.331 kb on - strand, within nuoNat 4458.357 kb on + strand, within nuoNat 4458.409 kb on - strandat 4458.489 kb on - strandat 4458.516 kb on + strandat 4458.516 kb on + strandat 4458.516 kb on + strandat 4458.517 kb on - strandat 4458.521 kb on + strandat 4458.522 kb on - strandat 4458.532 kb on - strandat 4458.597 kb on - strandat 4458.597 kb on - strandat 4458.629 kb on + strandat 4458.630 kb on - strandat 4458.847 kb on - strand, within yfbMat 4458.847 kb on - strand, within yfbMat 4458.849 kb on - strand, within yfbMat 4458.849 kb on - strand, within yfbMat 4458.849 kb on - strand, within yfbMat 4459.316 kb on + strandat 4459.352 kb on + strandat 4459.353 kb on - strandat 4459.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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4,457,593 - nuoN OKFHMN_22900 0.36 -0.2
4,457,838 + nuoN OKFHMN_22900 0.53 -1.8
4,457,966 + nuoN OKFHMN_22900 0.62 +0.4
4,457,967 - nuoN OKFHMN_22900 0.62 -2.1
4,457,967 - nuoN OKFHMN_22900 0.62 -1.5
4,458,045 + nuoN OKFHMN_22900 0.67 -1.7
4,458,328 - nuoN OKFHMN_22900 0.87 -1.2
4,458,330 + nuoN OKFHMN_22900 0.87 -0.6
4,458,330 + nuoN OKFHMN_22900 0.87 +0.8
4,458,331 - nuoN OKFHMN_22900 0.87 -1.0
4,458,357 + nuoN OKFHMN_22900 0.89 -0.6
4,458,409 - +1.7
4,458,489 - -0.3
4,458,516 + -0.9
4,458,516 + +0.1
4,458,516 + -1.0
4,458,517 - +1.4
4,458,521 + -0.4
4,458,522 - +0.3
4,458,532 - -1.0
4,458,597 - +0.8
4,458,597 - -0.3
4,458,629 + +0.4
4,458,630 - -0.8
4,458,847 - yfbM OKFHMN_22905 0.52 +0.3
4,458,847 - yfbM OKFHMN_22905 0.52 +1.4
4,458,849 - yfbM OKFHMN_22905 0.52 +0.4
4,458,849 - yfbM OKFHMN_22905 0.52 -0.1
4,458,849 - yfbM OKFHMN_22905 0.52 -0.1
4,459,316 + +2.1
4,459,352 + -0.0
4,459,353 - -0.2
4,459,406 - +0.1

Or see this region's nucleotide sequence