Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroC and mepA are separated by 3 nucleotides mepA and yfcA overlap by 1 nucleotides yfcA and epmC overlap by 1 nucleotides epmC and yfcL are separated by 33 nucleotides yfcL and mnmC are separated by 120 nucleotides
OKFHMN_22615: aroC - chorismate synthase, at 4,400,743 to 4,401,828
aroC
OKFHMN_22620: mepA - penicillin-insensitive murein endopeptidase, at 4,401,832 to 4,402,656
mepA
OKFHMN_22625: yfcA - putative membrane transporter protein YfcA, at 4,402,656 to 4,403,465
yfcA
OKFHMN_22630: epmC - elongation factor P hydroxylase, at 4,403,465 to 4,404,013
epmC
OKFHMN_22635: yfcL - Uncharacterized protein YfcL, at 4,404,047 to 4,404,325
yfcL
OKFHMN_22640: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 4,404,446 to 4,406,452
mnmC
Position (kb) 4402
4403
4404 Strain fitness (log2 ratio) -1
0
1
2 at 4401.928 kb on - strand, within mepA at 4401.963 kb on + strand, within mepA at 4402.077 kb on + strand, within mepA at 4402.259 kb on + strand, within mepA at 4402.365 kb on + strand, within mepA at 4402.467 kb on - strand, within mepA at 4402.467 kb on - strand, within mepA at 4402.679 kb on + strand at 4402.862 kb on + strand, within yfcA at 4402.910 kb on + strand, within yfcA at 4402.911 kb on - strand, within yfcA at 4402.913 kb on + strand, within yfcA at 4402.957 kb on + strand, within yfcA at 4402.957 kb on + strand, within yfcA at 4402.957 kb on + strand, within yfcA at 4402.958 kb on - strand, within yfcA at 4402.963 kb on - strand, within yfcA at 4402.963 kb on - strand, within yfcA at 4402.982 kb on - strand, within yfcA at 4403.013 kb on - strand, within yfcA at 4403.023 kb on - strand, within yfcA at 4403.074 kb on - strand, within yfcA at 4403.218 kb on + strand, within yfcA at 4403.418 kb on + strand at 4403.418 kb on + strand at 4403.463 kb on + strand at 4403.464 kb on - strand at 4403.464 kb on - strand at 4403.473 kb on + strand at 4403.545 kb on + strand, within epmC at 4403.567 kb on + strand, within epmC at 4403.589 kb on + strand, within epmC at 4403.590 kb on - strand, within epmC at 4403.595 kb on - strand, within epmC at 4403.595 kb on - strand, within epmC at 4403.660 kb on - strand, within epmC at 4403.813 kb on - strand, within epmC at 4403.954 kb on + strand, within epmC at 4403.957 kb on + strand, within epmC at 4404.151 kb on + strand, within yfcL at 4404.151 kb on + strand, within yfcL at 4404.151 kb on + strand, within yfcL at 4404.152 kb on - strand, within yfcL at 4404.152 kb on - strand, within yfcL at 4404.287 kb on - strand, within yfcL at 4404.287 kb on - strand, within yfcL at 4404.324 kb on - strand at 4404.395 kb on + strand at 4404.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,401,928 - mepA OKFHMN_22620 0.12 +0.8 4,401,963 + mepA OKFHMN_22620 0.16 +0.2 4,402,077 + mepA OKFHMN_22620 0.30 -0.1 4,402,259 + mepA OKFHMN_22620 0.52 -0.6 4,402,365 + mepA OKFHMN_22620 0.65 -0.6 4,402,467 - mepA OKFHMN_22620 0.77 +0.4 4,402,467 - mepA OKFHMN_22620 0.77 +0.4 4,402,679 + -0.1 4,402,862 + yfcA OKFHMN_22625 0.25 +0.9 4,402,910 + yfcA OKFHMN_22625 0.31 +0.5 4,402,911 - yfcA OKFHMN_22625 0.31 -0.0 4,402,913 + yfcA OKFHMN_22625 0.32 -0.2 4,402,957 + yfcA OKFHMN_22625 0.37 +0.4 4,402,957 + yfcA OKFHMN_22625 0.37 +0.0 4,402,957 + yfcA OKFHMN_22625 0.37 -0.4 4,402,958 - yfcA OKFHMN_22625 0.37 +0.1 4,402,963 - yfcA OKFHMN_22625 0.38 +0.6 4,402,963 - yfcA OKFHMN_22625 0.38 +0.0 4,402,982 - yfcA OKFHMN_22625 0.40 +1.4 4,403,013 - yfcA OKFHMN_22625 0.44 +1.2 4,403,023 - yfcA OKFHMN_22625 0.45 +0.8 4,403,074 - yfcA OKFHMN_22625 0.52 +0.4 4,403,218 + yfcA OKFHMN_22625 0.69 -0.1 4,403,418 + +0.1 4,403,418 + +0.4 4,403,463 + -0.4 4,403,464 - +1.8 4,403,464 - -1.4 4,403,473 + -0.4 4,403,545 + epmC OKFHMN_22630 0.15 +0.9 4,403,567 + epmC OKFHMN_22630 0.19 -0.6 4,403,589 + epmC OKFHMN_22630 0.23 -0.1 4,403,590 - epmC OKFHMN_22630 0.23 +1.4 4,403,595 - epmC OKFHMN_22630 0.24 -0.2 4,403,595 - epmC OKFHMN_22630 0.24 -0.0 4,403,660 - epmC OKFHMN_22630 0.36 -0.0 4,403,813 - epmC OKFHMN_22630 0.63 +1.4 4,403,954 + epmC OKFHMN_22630 0.89 -0.4 4,403,957 + epmC OKFHMN_22630 0.90 +0.9 4,404,151 + yfcL OKFHMN_22635 0.37 +0.4 4,404,151 + yfcL OKFHMN_22635 0.37 -1.0 4,404,151 + yfcL OKFHMN_22635 0.37 -0.1 4,404,152 - yfcL OKFHMN_22635 0.38 -1.4 4,404,152 - yfcL OKFHMN_22635 0.38 +0.0 4,404,287 - yfcL OKFHMN_22635 0.86 -0.6 4,404,287 - yfcL OKFHMN_22635 0.86 +0.4 4,404,324 - +2.4 4,404,395 + +0.4 4,404,396 - -0.6
Or see this region's nucleotide sequence