Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bcp and gcvR overlap by 1 nucleotides gcvR and dapA are separated by 145 nucleotides dapA and bamC are separated by 16 nucleotides
OKFHMN_21905: bcp - thioredoxin-dependent thiol peroxidase, at 4,257,536 to 4,258,006
bcp
OKFHMN_21910: gcvR - glycine cleavage system transcriptional repressor, at 4,258,006 to 4,258,578
gcvR
OKFHMN_21915: dapA - 4-hydroxy-tetrahydrodipicolinate synthase, at 4,258,724 to 4,259,602
dapA
OKFHMN_21920: bamC - outer membrane protein assembly factor BamC, at 4,259,619 to 4,260,653
bamC
OKFHMN_21925: OKFHMN_21925 - hypothetical protein, at 4,260,564 to 4,260,794
_21925
Position (kb) 4258
4259
4260 Strain fitness (log2 ratio) -1
0
1 at 4257.842 kb on - strand, within bcp at 4257.869 kb on - strand, within bcp at 4257.938 kb on - strand, within bcp at 4258.011 kb on + strand at 4258.041 kb on - strand at 4258.084 kb on + strand, within gcvR at 4258.218 kb on + strand, within gcvR at 4258.219 kb on - strand, within gcvR at 4258.219 kb on - strand, within gcvR at 4258.219 kb on - strand, within gcvR at 4258.346 kb on - strand, within gcvR at 4258.395 kb on + strand, within gcvR at 4258.488 kb on + strand, within gcvR at 4258.556 kb on + strand at 4258.557 kb on - strand at 4258.557 kb on - strand at 4258.637 kb on + strand at 4258.637 kb on + strand at 4258.637 kb on + strand at 4258.637 kb on + strand at 4258.638 kb on - strand at 4258.638 kb on - strand at 4258.638 kb on - strand at 4258.638 kb on - strand at 4258.638 kb on - strand at 4258.638 kb on - strand at 4258.638 kb on - strand at 4258.638 kb on - strand at 4259.601 kb on - strand at 4259.681 kb on - strand at 4259.681 kb on - strand at 4259.694 kb on - strand at 4259.739 kb on + strand, within bamC at 4259.812 kb on - strand, within bamC at 4259.834 kb on + strand, within bamC at 4260.087 kb on + strand, within bamC at 4260.207 kb on + strand, within bamC at 4260.230 kb on + strand, within bamC at 4260.299 kb on + strand, within bamC at 4260.307 kb on + strand, within bamC at 4260.456 kb on + strand, within bamC at 4260.456 kb on + strand, within bamC at 4260.457 kb on - strand, within bamC at 4260.457 kb on - strand, within bamC at 4260.459 kb on - strand, within bamC at 4260.526 kb on - strand, within bamC at 4260.527 kb on + strand, within bamC at 4260.590 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,257,842 - bcp OKFHMN_21905 0.65 -1.1 4,257,869 - bcp OKFHMN_21905 0.71 +0.1 4,257,938 - bcp OKFHMN_21905 0.85 -0.3 4,258,011 + -0.0 4,258,041 - -0.3 4,258,084 + gcvR OKFHMN_21910 0.14 +1.4 4,258,218 + gcvR OKFHMN_21910 0.37 -0.2 4,258,219 - gcvR OKFHMN_21910 0.37 -0.7 4,258,219 - gcvR OKFHMN_21910 0.37 -1.0 4,258,219 - gcvR OKFHMN_21910 0.37 +0.9 4,258,346 - gcvR OKFHMN_21910 0.59 -0.1 4,258,395 + gcvR OKFHMN_21910 0.68 -0.6 4,258,488 + gcvR OKFHMN_21910 0.84 -0.7 4,258,556 + +0.8 4,258,557 - +0.0 4,258,557 - -0.1 4,258,637 + -0.7 4,258,637 + +0.4 4,258,637 + +0.4 4,258,637 + -1.0 4,258,638 - -0.1 4,258,638 - -0.8 4,258,638 - +0.4 4,258,638 - +0.2 4,258,638 - +0.3 4,258,638 - +0.6 4,258,638 - -0.8 4,258,638 - +0.2 4,259,601 - -0.6 4,259,681 - -0.5 4,259,681 - +0.1 4,259,694 - -0.6 4,259,739 + bamC OKFHMN_21920 0.12 -1.1 4,259,812 - bamC OKFHMN_21920 0.19 -0.0 4,259,834 + bamC OKFHMN_21920 0.21 +0.5 4,260,087 + bamC OKFHMN_21920 0.45 +0.5 4,260,207 + bamC OKFHMN_21920 0.57 -0.5 4,260,230 + bamC OKFHMN_21920 0.59 -0.1 4,260,299 + bamC OKFHMN_21920 0.66 +0.4 4,260,307 + bamC OKFHMN_21920 0.66 -0.0 4,260,456 + bamC OKFHMN_21920 0.81 -0.2 4,260,456 + bamC OKFHMN_21920 0.81 +0.1 4,260,457 - bamC OKFHMN_21920 0.81 -0.5 4,260,457 - bamC OKFHMN_21920 0.81 -1.0 4,260,459 - bamC OKFHMN_21920 0.81 -1.4 4,260,526 - bamC OKFHMN_21920 0.88 -0.4 4,260,527 + bamC OKFHMN_21920 0.88 +0.3 4,260,590 + +0.1
Or see this region's nucleotide sequence